Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 219 5e-52 seq3 147 3e-30 seq37 93.3 5e-14 >seq9 Length=716796 Score = 219 bits (242), Expect = 5e-52 Identities = 1093/1720 (64%), Gaps = 43/1720 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| || ||| ||| ||||| | || ||||||||||| || |||||||| | Sbjct 54632 TGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATGCCAGTCTTGAGAC 54573 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | ||||| || | |||| | ||| ||| | |||| Sbjct 54572 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATTGTGGGATCCTTCATGT 54513 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||||| ||||| || || ||||| || || || || | ||| | | | Sbjct 54512 GAATGTTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 54453 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 | | ||| ||||| ||||| |||| ||| ||| || || | || || | Sbjct 54452 TGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 54393 Query 115766 CCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822 || || |||||||| || | || ||| || | | ||||||| | | | Sbjct 54392 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 54336 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAAC 115878 ||||||| ||| | | ||||||| | | ||| | |||||||| ||| Sbjct 54335 ACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGG----TTGACAACCTGGAAC 54280 Query 115879 TCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938 || || || ||| |||| | | |||||||||| ||||| ||||| ||||| |||||| Sbjct 54279 TCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTG 54220 Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998 || || | ||| |||| ||| ||| ||||||||||| || | ||| | |||||||| Sbjct 54219 TTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGA 54160 Query 115999 AGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCC 116058 | ||| | || | || | |||||||||| |||||| || || | | | || Sbjct 54159 ATACCGTGCTCCTTGATTTGCTCCTTGAGGGAGTCCCACTCCCAGAGGTCAGTGGGCTTG 54100 Query 116059 CCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCA 116118 | ||||||| ||||||||||| || |||| || || || ||||||| |||| |||| Sbjct 54099 ACGTCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCA 54040 Query 116119 TATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTC 116178 || || ||||| | || || | || | ||||| ||||| ||||| || || ||| Sbjct 54039 TAGGGACCCTCGATCTTGGCAATCTCCATGGATGCCTCAAGGGCAGCGTGGTAGATAGTC 53980 Query 116179 TCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACA-A 116237 ||||| || | |||| | || ||| || || || | |||| ||| | Sbjct 53979 TCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAGGGAAGAC-GCAGAGC 53921 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 | || | || || ||||| |||||||||| ||||| || || || | | || Sbjct 53920 GAGGAAAGCGTCAGCAAGACCCTGGACACCGACACCAATGGGTCGGTGGCGGCTGTTGCT 53861 Query 116298 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 || ||||| || ||||| || | ||| |||||| | | || || || | Sbjct 53860 GTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGAC 53801 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 116417 || ||||| || | || |||||||| | | | ||| | | || | | | ||| Sbjct 53800 AACCACCTTGGTAACGTCGTGAAGCTTCTTGAAGTCATAGCAGCCTTCGTTATAGTCGAC 53741 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | | ||| || || | || |||| || || |||| | ||| || ||| ||| Sbjct 53740 AAATGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTA 53681 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| || || || || || | || || || ||||| |||| |||||| || || Sbjct 53680 CTCAATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT 53621 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 ||| ||| || ||||||||||| ||||| | || | || ||||| || |||| || Sbjct 53620 CTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTC 53561 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCT 116653 || |||| | ||| | | || | ||| | | ||| ||| | | || |||| Sbjct 53560 TAGGATAGAGTACCACAGCTTCTG-AGCTCGGATAGT---CTTGCGACCCTTTCCTTCCT 53505 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGT 116712 ||| ||||| || || ||||| || ||||| ||| ||| || | || || || Sbjct 53504 TCTCATACTTCTCATACAGCGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAGG- 53447 Query 116713 GCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAG 116769 || || | || || | | || ||| | ||| || |||||| ||||||||||| Sbjct 53446 GCATTCGTTAGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAAC 53389 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 || || ||||||||||| || ||| || || || || | ||||| | || || Sbjct 53388 AGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGG 53329 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || || | || | || || | | ||| |||||||| || || ||||| | || Sbjct 53328 TTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCA 53269 Query 116890 ATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | | || ||| ||| |||||| || || || || || ||| || || Sbjct 53268 AAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACT 53209 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG 117006 |||||||| || |||||||| | || || || || || ||| ||| || Sbjct 53208 CGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTG 53149 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | || | ||||| || || || ||||| || ||| ||| || || || || Sbjct 53148 GCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 53089 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | | | | || ||||||| || || || ||| |||| | | | |||||||| Sbjct 53088 GTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCAT 53029 Query 117127 CTCGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184 |||| || | ||| || ||||||||||||||||| || || | || ||| | Sbjct 53028 GAGGACAGCTGAG--CTTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGG--GT 52973 Query 117185 ACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACA 117222 | | | |||| |||||| | ||| ||||| | |||| Sbjct 52972 AAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 52933 >seq3 Length=984773 Score = 147 bits (162), Expect = 3e-30 Identities = 352/523 (67%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||| ||||| ||||| || || || |||||| ||| || Sbjct 415105 AGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCC 415046 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| | |||||| | |||||| || | ||| | || ||||||||| Sbjct 415045 AGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGAT 414986 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697 ||||| || || || |||| ||||||| ||||||||| | | | |||| | || Sbjct 414985 ACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGAA 414927 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||||| || ||||| | ||||| || || || || | ||||| || || | | Sbjct 414926 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 414867 Query 127758 AGA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||| || || | | ||| | || |||| ||| | || ||||| || || || Sbjct 414866 AGAGGTAGCTGCGCTGGCTG--TGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGT 414809 Query 127816 TTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 127874 ||| ||||| | | ||| || | ||| | ||||||| | || || ||| | Sbjct 414808 CTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGA 414750 Query 127875 TCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 |||| ||||| || ||| | | ||||| ||||| || ||||| ||| Sbjct 414749 TCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAG 414690 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 127991 |||| || |||||||| | ||||| | || || | ||||||| || | |||| Sbjct 414689 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 414630 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||||| |||||||| || ||||| | |||||| || ||||| Sbjct 414629 AGTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 414587 >seq37 Length=345955 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 175952 CCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCC 176011 ||||| | ||||| ||||| |||| ||||||||||||||||||| | |||| | ||| Sbjct 176550 CCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGAGCC 176609 Query 176012 AACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCC-GC 176070 || |||||||| | | || ||||| || ||||| |||||||| | | |||| | Sbjct 176610 AATCCAACAATCGTCTGCTGCAGCGAGACATCGCCGTGGTGGTAGGCGGTC-AGTCCAGA 176668 Query 176071 CACATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCA 176127 || || | |||| || | | |||| ||||||||||| | ||| | | ||| || Sbjct 176669 GACGTAACCAGCCAGCTCCACAACCT---TCTCATCCTTGACCACGTTTCTCTTGAAACA 176725 Query 176128 CGCATACATGACCTTTCTCTGTGAAGGCTT 176157 || |||| ||||||| || |||||| Sbjct 176726 AGCGTACAGCACCTTTCGTTGACCAGGCTT 176755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504278171960