Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 210 3e-49 >seq3 Length=984773 Score = 210 bits (232), Expect = 3e-49 Identities = 562/848 (66%), Gaps = 37/848 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| ||| ||| || |||||||| |||| ||||| Sbjct 415378 CTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 415319 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || || ||| |||| |||||||| | |||| | || || ||||| | Sbjct 415318 GGAGGACTTG-TAGATCTTCTCGTTGCCGAGAGCGACGAGCAGACGATCGGCGACAAACT 415260 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 | ||||| || | |||| || ||| || |||||||| | |||||| || || Sbjct 415259 CAATGTA-CTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCG 415201 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCGTA 159885 | || ||||||| ||| || ||| || || || | |||| |||| | | Sbjct 415200 GTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCT------CACGGATAATC 415147 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAAC---------AGGAGGCACGCAAAGTCGCA 159936 || ||| || | ||| ||| | || ||||| ||||||||| Sbjct 415146 TCCTTGCTGGCGC-------GGTTCTTCAGGTGAGAGTGGAGCAGGCAAGCAAAGTCGGT 415094 Query 159937 GTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCC 159996 |||||| ||||| || |||||||| | ||||||||| | | | ||||| ||||||| || Sbjct 415093 GTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACC 415034 Query 159997 ACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGC 160056 | | |||||||| || |||| ||||| || ||||| || ||||| ||||| ||||| Sbjct 415033 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACGGC 414974 Query 160057 CGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGC 160116 ||||| || ||||| | || |||| || | || |||| || ||||| | |||| Sbjct 414973 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGAATCCACTTGATGGC 414914 Query 160117 CCATTCAGCCTTCTTTGCGA-TGCACGGCATGCGCTCGACGGCGTTAAACA---ATCTGT 160172 ||| || |||||||| |||| |||| || ||| ||| | |||||| || | | ||| Sbjct 414913 CCAGTCGGCCTTCTT-GCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGC 414855 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 ||| | | ||||||| || | || ||| ||||| | || | ||| | Sbjct 414854 GCTGGCTGTGC---TCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTGGA 414798 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCT 160292 || || || ||||| || |||||| || ||||| | ||| ||||| Sbjct 414797 TGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGC 414738 Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352 |||| | | |||| || | || || | ||||||| ||| |||||||| |||| Sbjct 414737 CGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGCCA 414678 Query 160353 ACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACG 160411 | |||||||||||| | ||||||| | ||| || | || | ||||| ||| || Sbjct 414677 GGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGA 414619 Query 160412 TCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATG 160471 || | || || ||||| ||| || ||| |||| || ||||| || |||||||||| Sbjct 414618 TCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATT 414559 Query 160472 GCCCAGAT 160479 |||||| Sbjct 414558 TGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151413073360