Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 273 2e-68 seq24 123 2e-23 seq25 118 1e-21 seq11 107 2e-18 >seq3 Length=984773 Score = 273 bits (302), Expect = 2e-68 Identities = 585/861 (68%), Gaps = 21/861 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || ||||| ||||| || ||||| || || || || || || | Sbjct 415411 CATGACACCAGCCTTCTGATACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 415352 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || ||| ||| | ||| || || |||||||||| | |||||| ||| | |||| Sbjct 415351 CAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTGCC 415292 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || |||||||||| | ||||| || ||||| ||||| ||| ||| | | || Sbjct 415291 GAG-AG--CGACGAGCAGACGATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGC 415235 Query 132767 AATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | | | ||||||||| |||| || || || ||||| | || |||||||| | Sbjct 415234 GTTCATG-CCCAGCAGA-GCACAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTG 415177 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || || |||| ||| || | | | || ||| | || | | || || | Sbjct 415176 ACGGCATCAGTGATGATCTCACGGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAG 415117 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 | || ||||||||||||| |||| ||||| || | || || || |||||| | Sbjct 415116 TGGAGCAGGCAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAG 415057 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||| ||| |||||||| || | || |||||||| || |||| ||| || || Sbjct 415056 AAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCG 414997 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 ||||||| ||||| ||||| || || || || || |||| | | || | | || Sbjct 414996 CTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCC 414937 Query 133066 TTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||| ||| ||||| | ||||| |||||||| | | ||| || || || | Sbjct 414936 TTGTCCTGA--ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCT 414879 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAG 133181 | |||||||| || | | || | | || | | | ||||||||||||||||| Sbjct 414878 CAATGGCGTTGAAGAG--GTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAG 414821 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 || || | || ||||| | ||||||||| ||| || || ||||| ||||| || Sbjct 414820 CAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCG 414761 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 |||||| | ||| || || ||||||||||||||| || |||||||| ||||| Sbjct 414760 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 414701 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 |||| ||| || || |||||||| | ||| |||||| | ||||| ||||||| Sbjct 414700 GTCGGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 414641 Query 133362 GCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 ||| | ||||||| || ||||||||||| || | ||||||| ||||||| || || Sbjct 414640 GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGA 414581 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 |||||||| ||||||||||| Sbjct 414580 AGCCTCGGCCTTTTTGTACAT 414560 >seq24 Length=472585 Score = 123 bits (136), Expect = 2e-23 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || ||| | | Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || ||| || | ||||| ||||| |||||| | ||||| Sbjct 84860 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCA 84918 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 84919 GCAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 84978 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||| || ||||| ||||| || ||| || | || |||| Sbjct 84979 CATCCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGTCTGCGTGGTGGCC 85028 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| |||| |||||| | |||| | | | Sbjct 84582 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTG 84641 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| || || ||||||| ||||| ||| Sbjct 84642 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTC 84700 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || || || ||||| || |||| |||||||| | ||| ||||||||||| ||| Sbjct 84701 ATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAG 84760 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||| || ||| Sbjct 84761 GAGTCTACTCTCCACCTGGTCCTTCGT 84787 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | || Sbjct 84287 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCTTCC 84346 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| ||||| | ||||| Sbjct 84347 GACACTATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 84406 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| || || || || | || || || |||||||||| Sbjct 84407 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 84466 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 84467 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTCCG 84501 >seq25 Length=464062 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 387718 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 387777 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 387778 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 387836 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | || || || ||||| || || | |||||||| | |||||| Sbjct 387837 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 387896 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| ||||| Sbjct 387897 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 387935 >seq11 Length=641957 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || |||||| || | ||||| || || || |||||||| ||||||||| | || ||||| Sbjct 26345 AACAAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA 26404 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | || |||||| | | | | || || |||| ||||| |||||||||||| | Sbjct 26405 GTCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCC 26464 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| | || | ||| ||||| ||||| || || | || ||||| || Sbjct 26465 GGATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTTTCTGA 26524 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTG 38444 |||||||||||| |||| ||| ||||| Sbjct 26525 CTACAACATCCAGAAGG-TGCGTCGCTG 26551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170417927040