Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 268 1e-66 seq3 158 2e-33 seq37 95.1 2e-14 >seq9 Length=716796 Score = 268 bits (296), Expect = 1e-66 Identities = 969/1494 (65%), Gaps = 29/1494 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| || || | || | || || | ||||| ||| Sbjct 52877 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 52936 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||||||| || |||||| | | || | ||| || | || || |||||| Sbjct 52937 CTTGAGACATACCACCTCATGTCCAGCAAGTTCTTTACCCATGCCTCCCCCACTCTCTTC 52996 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || | | || ||||| || ||||| | | | ||||| || Sbjct 52997 AACGCTGGTACCCCGCAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGAC 53056 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||| | | ||||||| || || ||| ||||||| Sbjct 53057 AGCATTGAGGGTATCTACGACACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTGGT 53116 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| | || | |||| ||| ||| || || || Sbjct 53117 GGTATCGGCCTGAACGTCCACCGTATCCGTGCCACGGGCTCTTACATTGCCGGCACCAAC 53176 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||| || || |||||||| || || ||| ||| || | || || Sbjct 53177 GGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTC 53236 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | ||| ||| ||| | | || |||| || ||||| |||||||| Sbjct 53237 GACCAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCCATCTACCTCGAGCCTTGGCACGCT 53296 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| | | ||||||||||| | || ||||| || | || |||| || ||| Sbjct 53297 GATGTTTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGT 53356 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG--TG 112146 || || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| || Sbjct 53357 GACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAACTTG 53416 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 | | ||| || | | || || || || || || || || | || ||| ||| || Sbjct 53417 G--ACTGGACTTTGATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTATGGC-GA 53472 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 || || || || || || ||||| ||| | ||| | || | | || ||| | Sbjct 53473 AGAATTCGAGGCGCTGTATGAGAAGTATGAGAAGGAAGGAAAGG-GTC-GCAAGACTATC 53530 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | |||| | || | ||||| | |||| || || | || || |||||||| | || | Sbjct 53531 CGAGCT-CAGAAGCTGTGGTACTCTATCCTAGAGGCCCAGACTGAGACTGGCAACCCCTT 53589 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||||||||| || || || |||| ||||| || || ||||| |||| ||| Sbjct 53590 CATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGAACCATCCG 53649 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || ||| | || | | | | || ||| ||||| || Sbjct 53650 CAGCTCCAACCTCTGCACCGAGATCATTGAGTACTCTGCCCCTGACGAGGTCGCTGTCTG 53709 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGAT 112499 ||| | || || | |||||||| | ||| || | | | || ||| | | ||| Sbjct 53710 CAACTTGGCCTCTTTGGCTCTCCCTGCATTTGTCGA-CTATA-ACGAAGGCTGCTATGAC 53767 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | || || ||||| ||||| || || ||||| ||| | | || ||| Sbjct 53768 TTCAAGAAGCTTCACGACGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATCGAT 53827 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || | ||||||||| || ||||| || || | | ||||| || |||||| Sbjct 53828 GTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGCAACAGCCGCCACCGACCCATTGGT 53887 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGA 112678 |||||||||| ||||| || || | ||| | || || || | | || || || Sbjct 53888 GTCGGTGTCCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCCTTCGAATCACC 53946 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 |||||| || | || || || |||||||| || || ||||| || |||||||| Sbjct 53947 CGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACTATCTACCACGCTGCCCTTGAGGC 54006 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 |||| | || || | || ||||| ||||| | || |||| || || || || Sbjct 54007 ATCCATGGAGATTGCCAAGATCGAGGGTCCCTATGAGTCATTCAAGGGATCACCCGCCTC 54066 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGA 112858 |||| | || || ||||| ||||||| | || ||| | || || ||||| Sbjct 54067 TGAAGGCATTCTCCAGTTTGACTTGTGGGACGTCAAGCCCACTGACCTCTGGGAGTGGGA 54126 Query 112859 CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAAT 112918 | | |||||||| | ||||||||| | ||| |||| |||||| | | | || || || Sbjct 54127 CTCCCTCAAGGAGCAAATCAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCCCAT 54186 Query 112919 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 112978 ||| || ||| ||| | || ||| | || || ||||||||||| || |||||||| | Sbjct 54187 GCCCACTGCCAGCACTTCCCAGATCCTAGGCAACAATGAATGCTTCGAGCCCTACACCTC 54246 Query 112979 GAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCATCT 113035 |||||||| | | || | ||| || || ||||| | ||||||| | || ||| Sbjct 54247 CAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCT 54306 Query 113036 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 | |||| || || | ||| ||||||||| | | ||||||| | | ||| Sbjct 54307 CAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 54357 >seq3 Length=984773 Score = 158 bits (174), Expect = 2e-33 Identities = 356/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || || ||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 414587 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 414646 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||||| ||||| || ||| Sbjct 414647 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 414706 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 414707 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 414765 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | || || | |||| ||| | | | || ||||| ||| | |||| Sbjct 414766 CTTCTACG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCA 414824 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 102109 | |||| || | ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 414825 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 414882 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || |||| ||||| || || ||||| || |||||| || | |||| | | | Sbjct 414883 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTC 414942 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||||||| |||| ||| | || ||||| |||||||||||||||||| || Sbjct 414943 -TTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAG 415001 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | |||||||||||| ||||||||||||| || || |||||||| Sbjct 415002 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 415061 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 415062 ACGAGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGC 415104 >seq37 Length=345955 Score = 95.1 bits (104), Expect = 2e-14 Identities = 200/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095 || || | |||||| | ||||| ||||| || | |||||||||||||| |||| || Sbjct 176541 AGTCGAGAACCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 176600 Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155 || | ||||| |||||||| | | || ||||| || ||||||||||| || || Sbjct 176601 TCTTGAGCCAATCCAACAATCGTCTGCTGCAGCGAGACATCGCCGTGGTGGTAGGCGGTC 176660 Query 176156 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 176211 | | ||| | | |||| || |||| | |||||||||||| | ||| | Sbjct 176661 AGTCCAGAGACGTAACCAGCCA---GCTCCACAACCTTCTCATCCTTGACCACGTTTC-T 176716 Query 176212 GTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 176271 | |||||| ||||||| ||||| ||||| |||||| | ||||| ||| | Sbjct 176717 CTTGAAACAAGCGTACAGCACCTTTCGTTGACCAGGCTTCAATCCATCAATCATTGACGG 176776 Query 176272 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 176327 ||| || | | ||||||| |||||| | ||| ||||||| ||||||| Sbjct 176777 GATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 176832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739443714320