Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9 224 1e-53 seq3 102 1e-16 >seq9 Length=716796 Score = 224 bits (248), Expect = 1e-53 Identities = 1077/1691 (64%), Gaps = 51/1691 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || ||||||||| |||||| | | ||||| | | Sbjct 54600 CGTAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTG 54541 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| ||| || ||| | ||||| ||||| ||||| || ||||| Sbjct 54540 ATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCAAGGACTGGGACTGGTCAATGAAA 54481 Query 109528 CGACCACGATCAGCCGCCATGTCGATGAT---ACACTTTTGGCTAATTTCCCAGACAGTC 109584 |||||| || || | ||| | || ||| || || | || ||||| |||||| Sbjct 54480 GCACCACGGTCGGCTGACATCTGGACGATGTGACGCTGAGAG---ATCTCCCAAACAGTC 54424 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC---CA 109641 ||||||| |||||| || ||||||||| ||||| || ||||| || || Sbjct 54423 TTGTACAGGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGGATAGAACCGTTCTCA 54364 Query 109642 GCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCA 109701 || | | || | | |||||| | | |||||||| || | ||||| | Sbjct 54363 GCAATGA---TGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTG 54307 Query 109702 ACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 | ||| |||||| || || || |||||||| ||||| |||||||||| Sbjct 54306 AGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTG 54247 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | |||||||| ||||| || ||||||||||||||||| || | |||| || |||||| Sbjct 54246 GAGGTGTAGGGCTCGAAGCATTCATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGC 54187 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 ||||| || | ||| | |||||| || | ||| | | ||| | |||| | | | Sbjct 54186 ATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTGATTTGCTCCTTGAGGGAG 54127 Query 109882 TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 ||||| || | | || | | || | ||||||| || || || | Sbjct 54126 TCCCACTCCCAGAGGTCA------GTGGGCTTGACGTCCCACAAGTCAAACTGGAGAATG 54073 Query 109942 CCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCG 110001 || |||| || || || |||||||| ||| || | ||||| | || ||| | ||| Sbjct 54072 CCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAGGGACCCTCGATCTTGGCAATCTCC 54013 Query 110002 GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGA 110061 || ||||| || || || || || ||||||||||| || || |||| |||| Sbjct 54012 ATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTTCAACTCGCGA 53953 Query 110062 GACTCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 | || | ||||||||||||| || | || ||| | || || |||||||| || Sbjct 53952 GCTTCGGGTGATTCGAAGGGAAGACGCAGAGCGAGGAAA-GCGTCAGCAAGACCCTGGAC 53894 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 ||||| ||||||||| || || |||| | ||||| | |||||||| | Sbjct 53893 ACCGACACCAATGGGTCGGTGGCGGCTGTTGCTGTTGCGAGCCTCCTGAACGGGGTAGTA 53834 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 ||| ||||||| || ||||| || || ||| || | || || || || Sbjct 53833 GTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGTCGTGAAGCTT 53774 Query 110241 GTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 | | | || | | |||| | | | |||| || |||||||| | ||| || Sbjct 53773 CTTGAAGTCATAGCAGCCTTCG--TTATAGTCGACAAATGCAGGGAGAGCCAAAGAGGCC 53716 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 | ||||| |||| |||||| | | | ||| || | || || || || | |||| Sbjct 53715 AAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGCAGAGGTTG 53656 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 || || ||| |||| ||||||||| || || |||||| |||||||| || Sbjct 53655 GAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAA 53596 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGC 110477 |||||| | ||| | ||||| || ||||| | || || || | | ||| | | || | Sbjct 53595 AGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAGCTTCTG- 53537 Query 110478 GGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCA 110535 || ||| || ||||| | | ||||||| ||| ||||| |||| |||| Sbjct 53536 AGCTCGGATAGTCTTGCG--ACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCG 53479 Query 110536 AATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCA 110594 ||||| | || || |||| ||| || || || || || || | | | ||| Sbjct 53478 AATTCTTCGCCATAGCAGTCAGCAAG-GCCAGGGCATTCGTTAGGGCACATCAAAGTCCA 53420 Query 110595 ATTTCCA--CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAA 110652 |||| || |||||| | |||||||||||| ||||| ||||| | || ||| Sbjct 53419 --GTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAAC 53362 Query 110653 AGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATG 110712 ||||||||| ||| ||||||| | || ||||| ||| || || | || || | Sbjct 53361 AGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAA 53302 Query 110713 ATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCC 110766 | ||| | |||||| || ||||| |||| || | || ||| | | || || Sbjct 53301 ACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCC---AGGGCGCTTGTTGCCA 53245 Query 110767 GCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCG 110826 |||||| || || | || ||| |||||||| | ||||| || || || || | | Sbjct 53244 CCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTG 53185 Query 110827 GATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATA 110886 || ||| || || || ||| || ||||||| || ||||| | || Sbjct 53184 GAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGG 53125 Query 110887 CCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACC 110945 || |||||||| ||| ||| ||| ||||| ||| | | || | || ||||| Sbjct 53124 CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCT-TCAAAGTGTCGTAGATACC 53066 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 ||||| || |||| || | | || ||||| || |||| ||||| | || || Sbjct 53065 CTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGT 53006 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTG 111063 || || |||||||| || || | ||||| | | ||| |||| |||||| || | Sbjct 53005 ACCAGCGTTGAAGAGAGTGGGGGAGGCATG--GGTAAAGAACTTGCTGGACATGAGGTGG 52948 Query 111064 TATGTGTCGAG 111074 ||||| || || Sbjct 52947 TATGTCTCAAG 52937 >seq3 Length=984773 Score = 102 bits (112), Expect = 1e-16 Identities = 543/848 (64%), Gaps = 22/848 (3%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| || || || | ||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 415393 ATACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCAT 415334 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||| || || || ||| || |||| | | |||| | | | || |||| Sbjct 415333 GAAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTGCCGAGAGCGACG-AGCAGAC 415275 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||||| |||| |||| || || | |||| | ||||| || | ||| || Sbjct 415274 GATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGAGCAC 415215 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | |||||||| ||| | ||| | || |||||| || || || | | ||| Sbjct 415214 AGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCTCAC 415155 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAG---AGTTTAAACAACTCTACGGCAAATT 119502 | ||| | || | | ||| | |||| || || | | | | | ||||| | Sbjct 415154 GGATAATCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGGCAA--GCAAAGT 415098 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | || || || ||||| |||||||| ||||| || |||| || |||||||||| Sbjct 415097 CGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 415038 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | ||||| ||||| ||||| ||||||| ||| ||| |||||||| ||||| | Sbjct 415037 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAA 414978 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCACTTG 119678 | || || || | ||||||| || ||||| ||| |||||| ||| ||||||| Sbjct 414977 CGGCAGCAAAGGCAACGAGACGCTGGGC-AAAGGAAGAGTCCTTGTCCTGAATCCACTTG 414919 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTG 119737 | ||||||| |||||| ||||| || | || | ||||| | ||| | || | Sbjct 414918 ATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 414859 Query 119738 CTTC-TTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCAT 119796 || | | | | | ||||| | || | || ||||| |||||||||||| | Sbjct 414858 CTGCGCTGGCTGTGC--TCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGT 414801 Query 119797 GAACCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACT 119855 | | | | ||| || ||| | | || || | ||||| |||| || || || Sbjct 414800 GGATGTTCTCCATCATG-ATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACC 414742 Query 119856 TCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAAT 119915 ||| | ||| | | | || || ||||| || ||||| |||| ||||| Sbjct 414741 TCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAG 414682 Query 119916 GCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCC 119972 || | ||||| ||||| | || || | |||||| || ||| |||||||||| | Sbjct 414681 GCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGC 414622 Query 119973 ATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAG 120032 | ||| || |||| || | ||| || || |||||| || || |||||||| || Sbjct 414621 AGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTAC 414562 Query 120033 AGTTCCCA 120040 | || ||| Sbjct 414561 ATTTGCCA 414554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973195001800