Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq9 224 1e-53 seq3 118 1e-21 >seq9 Length=716796 Score = 224 bits (248), Expect = 1e-53 Identities = 968/1500 (65%), Gaps = 39/1500 (3%) Strand=Plus/Minus Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | ||||||| | | |||||| || ||| | | ||||| |||| || Sbjct 54357 ATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAG 54298 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| | ||||| || || ||| | || | | |||||||| | |||||| Sbjct 54297 GGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAG 54238 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || || ||||||||||| || || | ||| || | ||| ||| || ||||| || || Sbjct 54237 GGCTCGAAGCATTCATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCG 54178 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT-- 106070 | | | |||||| |||| ||| | |||||||| | |||||||| ||||| | Sbjct 54177 ACGAGCAAACTGTTGCGAATACCGTGCTCCTTGATTTGCTCCTTGAGGGAGTCCCACTCC 54118 Query 106071 CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 | || | || | || || | | ||||||| ||||| || || | |||| || | || Sbjct 54117 CAGAGGTCAG-TGGGCTTGA-CGTCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGG 54060 Query 106131 GAGAACCCTCAAATGTCTCATA-GGAACCTTGGGCTTCAGCCAAT-TCACAGCTCGCCTC 106188 | || |||| |||| |||||| ||| ||| | ||| | |||| || | ||||| Sbjct 54059 GTGATCCCTTGAATGACTCATAGGGACCCTCGATCTT--GGCAATCTCCATGGATGCCTC 54002 Query 106189 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 106248 |||| ||||| || || || |||||||| | |||| ||| ||||| ||| Sbjct 54001 AAGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGA 53942 Query 106249 ATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 || || | | || ||| | | || | || || ||||| || ||||| | ||||| Sbjct 53941 TTCGAA-GGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGGACACCGACACCAA 53883 Query 106308 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 | |||| ||| || | || || || || || |||||| || | || || | Sbjct 53882 TGGGTCGGTGGCGGCTGTTGCTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGA 53823 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427 ||| ||||| || || | ||| | ||| || | || ||||| || | | ||| Sbjct 53822 TGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGTCGTGAAGCTTCTTGAAGTCAT 53763 Query 106428 AAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 106483 | || || | || | | | |||| | || || || | || ||||| ||||| Sbjct 53762 A---GC-AGCCTTCGTTATAGTCGACAAATGCAGGGAGAGCCAAAGAGGCCAAGTTGCAG 53707 Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTA 106543 ||||| ||| || | | |||||| | || || || || | |||||| || Sbjct 53706 ACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGCAGAGGTTGGAGCTGCGG 53647 Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 || || |||| ||||| ||||| ||||| |||||| ||||||||||| |||||| || Sbjct 53646 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAG 53587 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTAC 106662 || | || ||||| ||||| | || || || | | ||||| | || | ||| | | Sbjct 53586 GGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAGCTTCTG-AGCTCGGAT 53528 Query 106663 AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722 | | | || ||| ||| ||| ||||| || || || || || || || | Sbjct 53527 AGTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATTCTTC-GC 53469 Query 106723 CACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA--C 106778 || || ||| | || || || || || || || || | | || ||| | ||| Sbjct 53468 CATAGCAGTCAGCAAGGCCAGG-GCATTCGTTAGGGCACATCAAAGTCCA--GTCCAAGT 53412 Query 106779 CCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TA 106837 || |||||| ||||||||||| || || || ||||| || | || || || | Sbjct 53411 TCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGG 53352 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 ||| || ||||||| | || ||||| || | ||||||||||| | | ||| ||| Sbjct 53351 CACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCG 53293 Query 106898 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 106953 ||||| ||||| || |||| || | | ||| | | | | ||| | || | || Sbjct 53292 TGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTG-CCACCCTGGTCGAC 53234 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 || | || ||| ||| || || |||||||| || || ||||| | || ||| || Sbjct 53233 GTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTT 53174 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || ||| ||| |||| | | | |||| || || || ||||| || Sbjct 53173 GGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCACC 53114 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 |||| ||| || || ||||| | | | ||| | |||||||| | || ||| Sbjct 53113 AGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTC 53054 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| || | | |||||||| ||||| ||| | | || |||||||| ||||| Sbjct 53053 GTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTACCAGCGTTGAA 52994 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAG 107251 ||| || || | || || | | | | |||| |||||| || ||||||||| | | Sbjct 52993 GAGAGTGGGGGAGGCATG--GGTAAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGG 52936 Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||| ||||||| || || | ||| | ||||||||||||| ||||| || ||| Sbjct 52935 ACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGT 52876 >seq3 Length=984773 Score = 118 bits (130), Expect = 1e-21 Identities = 346/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| ||||||||||| || || || || || || |||||| ||||| Sbjct 415104 GCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCA 415045 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 415044 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 414985 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452 ||||| || ||||| |||| || |||| ||| ||||| ||| | |||| | || Sbjct 414984 CCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGAAT 414926 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || || ||||| | |||||||| ||| || || | || | ||||| | || Sbjct 414925 CCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 414866 Query 117513 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 117571 | | ||| | | | | ||||| | ||| |||| || | || || || | Sbjct 414865 GAGGTAGCTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCT 414807 Query 117572 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 414806 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 117631 TGCACTTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 || || || |||| ||| | | ||||| ||||| || ||||| |||| Sbjct 414747 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 414689 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 117746 |||||| |||||||||| ||||| | ||| || | || |||| || | ||||| Sbjct 414688 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 414629 Query 117747 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 414628 GTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 414587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977990216440