Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 7e-12 >seq9 Length=716796 Score = 86.0 bits (94), Expect = 7e-12 Identities = 214/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| ||||| || ||||| | | | | ||||| ||||| ||||| |||||||| | Sbjct 53482 CTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGT 53423 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| ||| | || | || | |||| || | ||| || ||||| ||||| | || Sbjct 53422 CCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAA 53363 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | | | | ||||| ||||| ||| | || ||||| || || | Sbjct 53362 CAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAA 53303 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | |||||| ||||| || || | || || || | | || || || || || || || Sbjct 53302 AACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACC 53243 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | |||| | ||| |||| ||||| || || Sbjct 53242 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 53183 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 |||| ||||| || | ||| ||| Sbjct 53182 GGTACCGTTGGTGCCGGCAATGTAA 53158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106122956840