Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 >seq1 Length=1198811 Score = 91.5 bits (100), Expect = 1e-13 Identities = 252/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || ||||||||| ||||| || |||||||| |||| | ||| | Sbjct 1128489 TGTGGCAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTTGGGTTCCATGCGCTGAGGATCA 1128430 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCA---CGGCGTTTTGCAGCTGAT 30121 | | | ||| | ||| |||| | | || || | |||| |||||| | Sbjct 1128429 TTCTGCGGTCGTAGGGGCTGTTGCGCAGCTTGTGGATAATCTCGGC------CAGCTGGT 1128376 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | |||||||| || || ||||| || || |||| || Sbjct 1128375 CGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACATATTCTGCGCCAAAGTGCCGCC 1128316 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 ||||||| ||||| || || || ||||| || | || | ||| || |||| ||| Sbjct 1128315 ACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGGGTGAGGCCCACGCTGT 1128256 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| |||||| ||||||||||||| || || ||| ||| | Sbjct 1128255 CGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGCGG 1128196 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 ||||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 1128195 TGGAGGAGGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 1128137 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 || | |||||| ||||| ||||| Sbjct 1128136 ACTCGCTTGGTGGTGAGCAGGGG 1128114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615702609713