Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9 361 1e-94 seq3 205 2e-47 >seq9 Length=716796 Score = 361 bits (400), Expect = 1e-94 Identities = 1157/1760 (66%), Gaps = 90/1760 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||| || |||| ||| ||||| ||||||||||| ||||| Sbjct 54636 ACTGTGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATGCCAGTCTTG 54577 Query 212613 AGGCC---CTTGCCCCAGCC-GTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATAT 212667 || || ||| |||||| ||| | |||||| |||| ||| |||| | || Sbjct 54576 AGACCAAGCTT---CCAGCCAGTGAA-GTGCAT-GCTGGTGA---TCTTGCCC-----AT 54530 Query 212668 TCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGG 212727 | ||| ||||| || || | ||||| |||||| |||||| ||||| | Sbjct 54529 TGTGGG-ATCCTT------CATGTGAATGTTCAAGGACTGGGACTGGTCAATGAAAGCAC 54477 Query 212728 CCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGA 212787 | | ||| || | ||| | | ||| | | ||| |||| |||||| || |||||| | | Sbjct 54476 CACGGTCGGCTGACATCTGGACGATGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACA 54417 Query 212788 TTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGG 212844 | |||| ||| | || | | ||| |||||||| | ||| || | | ||| Sbjct 54416 GGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGA 54357 Query 212845 TCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGT 212904 | | | | ||| | ||| ||||||||| | | || ||||| || Sbjct 54356 TGCGGTTCTT---CATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCC 54300 Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964 |||||||| | |||||| || || | || || | | |||||| | ||| || |||| Sbjct 54299 AGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGT 54240 Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024 ||||||||| || || ||||| || || ||||| | ||||||||| ||||||||||| | Sbjct 54239 AGGGCTCGAAGCATTCATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGG 54180 Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC--GAAGCTCTGCCCA 213082 | || || | |||||| | | |||||||| ||| | | || || | | Sbjct 54179 CGACGAGCAAACTGTTGCGAATACCGTGCTCCTTGATTTG-CTCCTTGAGGG-------A 54128 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||||| |||| | ||| |||| ||||| ||||||||| | ||||| Sbjct 54127 GTCCCA-CTCCCAGA--GGTCAGTGGGCTTGACGTCCCACAAGTCAAACTGGAGAATGCC 54071 Query 213143 TTTGCTCACGGGGCTG--CCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || | | | || || |||| | | || ||||| || | |||||| | ||| Sbjct 54070 TT--CAGAGGCGGGTGATCCCTTGAATGACTCATAGGGACCCTCGATCTTGGCAATCTCC 54013 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||||||| |||||| || ||||| || | | |||| | || Sbjct 54012 ATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTTCAACTCGCGA 53953 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 || || || || |||||| | || ||| |||| | ||||| || |||||||| Sbjct 53952 GCTTCGGGTGATTCGAAGGGAAGACGCAGAGCGA-GGAAAGCGTCAGCAAGACCCTGGAC 53894 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAA 213378 |||| || ||||||| ||| | ||| ||| |||| ||||| | |||||| Sbjct 53893 ACCGACACCAATGGGTCGGTGGCGGCTGTTGCTGTTGCGAGC-CTCCTGAACGGGGTAGT 53835 Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGT 213438 |||| |||||||| ||||||||| ||| |||| ||||| || | | || | Sbjct 53834 AGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGTCGTGAAGCT 53775 Query 213439 ACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGC 213492 || |||| | |||| || || | ||||| |||| || || | Sbjct 53774 TCT------TGAAGTCATAGCAGCCTTCGTTATAGTCGACAAATGCAGGGAGAGCCAAAG 53721 Query 213493 TGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACA 213552 ||||| |||||| || || ||||| | || | | | |||||| |||||||||||||| | Sbjct 53720 AGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGCAGA 53661 Query 213553 GGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCT 213612 ||||| || |||||||| |||||||||| ||||| ||| |||| || ||||| Sbjct 53660 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCT 53601 Query 213613 TGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGT 213672 |||| |||||| ||||| || ||||| ||||| | | || || | ||| || | Sbjct 53600 TGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAGCT 53541 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCT 213732 | || || | | | ||| | | | | ||| |||| || || ||| Sbjct 53540 TC-TGAGCTCGGATAGTCTTGCGACCCTTTCCTTCCTT--CTCATACTTCTCATACAGCG 53484 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACAT 213787 | | |||||| | ||| || | ||| || | || |||| || || || ||||| Sbjct 53483 CCTCGAATTCTTCGCCATAG---CAGTC-AG-CAAGGCCAGGGCATTCGTTAGGGCACAT 53429 Query 213788 GAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 | |||||||| || | |||| || | || ||||||||| || |||| ||| || | Sbjct 53428 CAAAGTCCAGTCCAAGTTCTTCTCA-ACACGCTTCATGAACAGATCAGGGATCCAGAGAG 53370 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 || ||||||||| | || | ||| ||| || ||| ||||| || || || | Sbjct 53369 CGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGA 53310 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCT 213963 | ||||| | || |||||||| ||||| | ||||||||||||||| || | || | | Sbjct 53309 ACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGT 53250 Query 213964 TGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 |||| |||||||| || ||||| ||||||||| || || | ||| | | | Sbjct 53249 TGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATAC 53190 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCA 214080 ||||||| |||||||| || || || || ||||| | ||| | | ||| | | Sbjct 53189 CGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGG---A 53133 Query 214081 TGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCA 214140 | || || || ||||| || |||||| |||||||| || | ||| ||| || Sbjct 53132 CGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGT 53073 Query 214141 TGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCC 214200 ||| || | |||||||| || | | || || || |||||| || |||| | || Sbjct 53072 AGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GAGCT 53014 Query 214201 TG-GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGG 214259 || | | |||| |||||| || |||||| ||||||| | | |||||| | || | | Sbjct 53013 TGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGACATG 52954 Query 214260 AGCCTGTAGGTCTCCAGGAC 214279 || ||| ||||| ||||| Sbjct 52953 AGGTGGTATGTCTCAAGGAC 52934 >seq3 Length=984773 Score = 205 bits (226), Expect = 2e-47 Identities = 566/850 (67%), Gaps = 26/850 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 415396 CTGATACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 415337 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || | | | || ||| | | |||| Sbjct 415336 CATGAAGTCGAAGGGGTTGGAGGACTTGTAGATCT-TCTCGTTGCCGAGAGCGACGAGCA 415278 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| ||||| |||| ||||| | ||| || ||| ||||||||| | || | Sbjct 415277 GACGATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGAG 415218 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAAT 48075 ||| ||| | ||||| || | ||||||| ||| || ||| ||||| || | || Sbjct 415217 -CACAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTG-ACGGCATCAGTGATGAT 415160 Query 48076 CT----GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 || | | | | | || | | | || || |||||| | | ||||| || Sbjct 415159 CTCACGGATAATCTCCTTGCTG-GCGCGGTTCTT---CAGGTGAGAG---TGGAGCAGGC 415107 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | |||||||| |||||| || || || || ||| ||| ||||||||||| || | Sbjct 415106 AAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGC 415047 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||||| || |||| ||||||||||| || | || || | || |||||||| Sbjct 415046 CAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGA 414987 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAG 48310 | ||||| || || || || || ||| | || | || |||| || ||||| |||| Sbjct 414986 TACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA- 414928 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | |||||||| |||||||| ||||| || || ||||| ||||| | Sbjct 414927 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 414868 Query 48371 AAGAGCTTCTTGCACTCAC-CTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 ||||| | ||| || | ||| ||| || ||||| || ||| | ||| | Sbjct 414867 AAGAGGTAGCTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGT 414809 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||| ||||||||| | ||||| | Sbjct 414808 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGAT 414749 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || | ||| | ||| | ||| ||||| ||||| || || || || ||||| Sbjct 414748 CTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 414689 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCC 48605 ||||||||| |||| || | ||| | ||||| | | | || || |||| Sbjct 414688 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCC 414630 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || ||| ||| || | || || | ||||||||||| || || | Sbjct 414629 AGTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCT 414570 Query 48666 TTTTGTACAT 48675 |||||||||| Sbjct 414569 TTTTGTACAT 414560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528363575040