Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 266 6e-66 seq3 221 2e-52 >seq9 Length=716796 Score = 266 bits (294), Expect = 6e-66 Identities = 744/1116 (67%), Gaps = 47/1116 (4%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||||||||||||||| ||||||||||| |||||| | ||| | || ||||| || Sbjct 54000 AGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTTCAA-CTCGCGAGCTTCGGGTGA 53942 Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||| | |||||| | | ||||| |||| || || ||||| || |||| ||| Sbjct 53941 TTCGAAGGGAAGACGCAG-AGCGAGGAAAG-CGTCAGCAAGACCCTGGACACCGACACCA 53884 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | |||||| | ||| | || ||| ||||| || |||| || | Sbjct 53883 ATGGGTCGGTGGCGGCTGTTGCTGTTGCGAGC-CTCCTGA-ACGGGGTAGTAGTTCACAT 53826 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA- 221653 |||| | ||||||||| | ||| |||||||| ||| | | || |||| Sbjct 53825 CGATGATGCGGTTGAGGTTACG------GAC---AACCACCTTGGTAA-CGTC--GTGAA 53778 Query 221654 -----TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 ||||| | | || ||| |||| | || ||||| || || || | Sbjct 53777 GCTTCTTGAAGTCATA---GCAGCCTTCGTTATAG---TCGACAAATGCAGGGAGAGCCA 53724 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 ||||| ||| || || || |||||||| | | |||| |||||||| || | Sbjct 53723 AAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGC 53664 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 |||||||| || |||||| ||||||| || || || ||| || ||| ||| | Sbjct 53663 AGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCAT 53604 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| ||||| ||||| ||||||||| ||| ||| | || || || ||| | Sbjct 53603 CCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACA 53544 Query 221889 GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGTATAG 221947 | | |||| |||| | ||||| | | | || || || |||||| ||| Sbjct 53543 GCT-TCTGA-GCTCGGA-TAGTCTTG-CGACCCTTTCCTTCCTTCTCATACTTCTCATAC 53488 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| || || | ||| || || || | ||||| || || | || |||||| Sbjct 53487 AGCGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATC 53428 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 | | |||||| | ||| | | || | || |||||| || || |||||||| || || Sbjct 53427 AAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCG 53368 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || || || | || || ||| ||| ||||| ||| || | || || | ||| Sbjct 53367 AGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAC 53308 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 ||||||| ||||||||||| ||||| || |||| ||| | || || || ||||||||| Sbjct 53307 TCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTG 53248 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 |||||||| || || || ||| | |||||||| ||||| | || | | || Sbjct 53247 CCACCCTGGTCGACGTATCT-GGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACC 53189 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-C 222303 |||||| |||||||||||| |||||| | || ||| | || ||| ||| | Sbjct 53188 GTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCAC---GGATACGGTGGAC 53132 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || |||||||||||| || || || |||||||| || |||| | |||||| Sbjct 53131 GTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTA 53072 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||| ||||| || ||| ||||| | || || ||| || || || |||| ||||| || Sbjct 53071 GATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTG 53012 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | || || ||||| || || ||||| ||| || |||||| | || ||||| || Sbjct 53011 CGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGACATGAG 52952 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCC 222519 | ||| ||||| | ||| | | |||||||| || Sbjct 52951 GTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC 52916 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 54295 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 54236 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || || |||||||| |||||||| | |||||||| ||||||||||| || || Sbjct 54235 CTCGAAGCATTCATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGAC 54176 Query 221236 CAGCAGACTGTTGCG 221250 |||| ||||||||| Sbjct 54175 GAGCAAACTGTTGCG 54161 >seq3 Length=984773 Score = 221 bits (244), Expect = 2e-52 Identities = 566/858 (66%), Gaps = 26/858 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | || |||||||||||| |||||||||||| Sbjct 414551 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 414610 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 414611 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 414669 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||| || || || || |||||||| ||| |||| | Sbjct 414670 TCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 414729 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || ||||||||||||||||| || Sbjct 414730 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 414789 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || | ||| | || ||| | | || | Sbjct 414790 GGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGTCAAGGAGCACAG 414849 Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | || | || | || || ||||| ||| ||| || |||| | |||||| Sbjct 414850 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCG 414908 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||| |||||||| | | || | || | |||| | |||| || || |||| Sbjct 414909 ACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGCCT 414968 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||||||| || ||||| ||||| |||||||| | ||||| ||||||||||||||||| Sbjct 414969 TTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGA 415028 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 ||| || |||||| || ||| ||| ||||||||||| ||| | || ||||||| Sbjct 415029 AGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATGAGGGTC 415088 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCA 26069 | |||| || ||||| ||||||||| || | ||| || | || | | || Sbjct 415089 TGCACACCGACTTTGCTTGCCTGCTCCACTC---TCAC---CTGAAGAACCGCGCCAGCA 415142 Query 26070 A-GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 | |||| |||| || ||||||| || || || |||||| ||||||| Sbjct 415143 AGGAGATTATCCGT---GAG-ATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTG 415198 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 ||||||||||| || || |||| || |||||| Sbjct 415199 ACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACGCTGATGAAGCAGTACATT 415258 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCC 26243 |||| ||| ||||| | |||||| | || || || | ||||| ||| | || Sbjct 415259 GAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCCTCC 415318 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||| |||||||| ||||| ||||| || ||| || |||||||||||||| || || Sbjct 415319 -AACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAA 415377 Query 26304 GAGGGTCGGCGACTATCA 26321 | | || ||||| ||||| Sbjct 415378 GCGCGTTGGCGAGTATCA 415395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840376376640