Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 230 3e-55 seq3 118 1e-21 >seq9 Length=716796 Score = 230 bits (254), Expect = 3e-55 Identities = 971/1502 (65%), Gaps = 45/1502 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| || || | ||| | || || ||||||| |||| Sbjct 52877 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 52936 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||||||| || |||||| |||| | | | | || || | || || |||| Sbjct 52937 CTTGAGACATACCACCTCATGTCCAGCAAGTTCTTTACC--CATGCCTCCCCCACTCTCT 52994 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| |||||||| || | | ||| ||||| |||||||| | | || ||||| | Sbjct 52995 TCAACGCTGGTACCCCGCAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 53054 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || || | |||||||| | ||| | | | ||||| || || ||| ||||| Sbjct 53055 ACAGCATTGAGGGTATCTACGACACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTG 53114 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || || || |||| | | | |||| ||| ||| || || | Sbjct 53115 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCCACGGGCTCTTACATTGCCGGCACCA 53174 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || | ||||| || || |||||||| || || ||| ||| || | || | Sbjct 53175 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 53234 Query 75570 TAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | || | | ||| | || || || | || ||||| | || || ||||| Sbjct 53235 TCGACCAGG-GTGGCAACAAGCGCCCTGGAGCCTTTGCCATCTACCTCGAGCCTTGGCAC 53293 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || ||| | | ||||||||||| | || ||||| || | ||||||| || ||| Sbjct 53294 GCTGATGTTTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGG-TCCGTGC 53352 Query 75686 A-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || || || | || ||||| || || || ||||||||||| |||||| || Sbjct 53353 CCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAA 53412 Query 75745 --TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGTGG 75800 ||| | ||| || | | || || || || || || || || | ||| || ||| Sbjct 53413 CTTGGAC--TGGACTTTGATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTATGG 53469 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGA 75857 || || || || || || || |||||||| |||| || | | ||| || Sbjct 53470 C-GAAGAATTCGAGGCGCTGTATGAGAAGTATGAGAAGGAAGGAAAGGGTCGCAA---GA 53525 Query 75858 CTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 || | | ||| | || | | ||| | |||| || | | ||||| |||||||| | Sbjct 53526 CTATCCGAGCT-CAGAAGCTGTGGTACTCTATCCTAGAGGCCCAGACTGAGACTGGCAAC 53584 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | |||||||||||||||||||| ||| ||||| ||||| ||||| ||||||| Sbjct 53585 CCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGAACC 53644 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || || ||||| || || | |||||| | | || ||| ||| Sbjct 53645 ATCCGCAGCTCCAACCTCTGCACCGAGATCATTGAGTACTCTGCCCCTGACGAGGTCGCT 53704 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGA-GACTCGCAC 76092 || ||||| ||||| || | || || || | |||| | | | || | || || Sbjct 53705 GTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCATTTGTCGACTATAACGAAGGCT-GC-- 53761 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | || ||||| || | || ||| | ||| | || || ||||| | Sbjct 53762 -TATGACTTCAAGAAGCTTCACGACGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCAT 53820 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||| || || | || |||||| || || || || || | || ||| |||| Sbjct 53821 CATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGCAACAGCCGCCACCGACC 53880 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTG 76271 |||||| | ||||| || ||||| || || | || | | ||| || | | || | Sbjct 53881 CATTGGTGTCGGTGTCCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTCCC-TTCG 53939 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | ||| ||||| ||| |||| | |||||||| || || || ||||| ||| Sbjct 53940 AATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACTATCTACCACGCTGCCC 53999 Query 76332 TGGAGGCGAGTTGTGA-ATTGGCTGAAGCCCAAGGTTCC-TATGAGACATTTGAGGGTTC 76389 | ||||| || |||| | ||| | ||| ||| |||||| |||| |||| || Sbjct 54000 TTGAGGCATCCATGGAGATTGCC--AAGATCGAGGGTCCCTATGAGTCATTCAAGGGATC 54057 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449 ||||| || |||| | || |||||||| ||||||| | | || || | || | || Sbjct 54058 ACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGACG-TCAAGCCCA-CTGACCTC 54115 Query 76450 CG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | | ||||| |||||||| | ||||||||| | ||| |||| |||||| | | Sbjct 54116 TGGGAGTGGGACTCCCTCAAGGAGCAAATCAAGGAGCACGGTATTCGCAACAGTTTGCTC 54175 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||| ||| | || ||| | || || ||||||||||| || Sbjct 54176 GTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTAGGCAACAATGAATGCTTCGAG 54235 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || ||||| | |||||||||| | || | ||| || || ||||| |||||||| Sbjct 54236 CCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAAC 54295 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 || |||| || || | | ||| ||||||||| | | ||||||| | | | Sbjct 54296 CCCTGGCTTCTCAAGGATCTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGC 54355 Query 76688 AT 76689 || Sbjct 54356 AT 54357 >seq3 Length=984773 Score = 118 bits (130), Expect = 1e-21 Identities = 346/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || || || ||||| ||||||| ||||| |||||||||| | || |||| Sbjct 414587 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 414646 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||||| ||||| || ||| Sbjct 414647 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 414706 Query 64831 GTTTTTGAGAATATCAATAACAATTTT-GCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | ||| |||| || || ||||| ||| || || | Sbjct 414707 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGC-GAGGTTCAGATCCCCGAGGCTCGATG 414765 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 414766 CTTCTACGGTT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCA 414824 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-AGTTATTTGAAGCCATCCAAACT 65007 | |||| ||| | ||||| | | | | ||| | | || | ||||| | || Sbjct 414825 TCGACACCTACGTCAAGGA-GCACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACC 414883 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 | || || ||| |||||||| | ||||| || || ||| || | |||| | ||| Sbjct 414884 ATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCT 414943 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||| ||| |||| || |||| ||||| || ||||||||||||||| ||| | Sbjct 414944 -TCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGC 415002 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || | | || | ||| | |||||| | ||||||||||| ||||| |||||| || Sbjct 415003 CTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAA 415062 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || ||||||||||| ||| || ||||| Sbjct 415063 CGAGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGC 415104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566758837280