Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq57 246 4e-60 seq25 176 6e-39 seq24 168 9e-37 seq22 131 2e-25 >seq57 Length=232149 Score = 246 bits (272), Expect = 4e-60 Identities = 502/737 (68%), Gaps = 9/737 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 78919 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 78861 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || || | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 78860 CATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 78801 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| |||||||| || || ||| || |||||||| || || || Sbjct 78800 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 78741 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | |||||||||||||| || || | ||||| | || || Sbjct 78740 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCTCCGACCCCGAGGTCCAGGCTGACAT 78681 Query 195544 AAAGGACTGGTCTTATGAAG-TTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 ||| ||| | | | ||| |||| || || | ||||| | | | || | Sbjct 78680 GAAGCACTTCCCCT-TCAAGATTGT---CGACAAGGGCGGCAAGCCCGTCGTCGAGGTCG 78625 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | || | || |||| || | || | ||||| || || || || ||| | ||| | Sbjct 78624 AGTTCAAGGGCGAGACCAAGAACTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCA 78565 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| ||||| || || | | | ||||| || || || | || || || |||| Sbjct 78564 AGATGCGTGAGACCGCTGAGGCCTACCTGGGTGGCACCGTCAACAACGCCGTCGTTACTG 78505 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||||| || ||||| || | | ||||| | Sbjct 78504 TCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGATGCCGGTCTCATTGCCG 78445 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 78444 GTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTG 78385 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| || | || || || | ||||| ||||||||||||||||| || | Sbjct 78384 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACTTTCG 78325 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 ||||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| | Sbjct 78324 ATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACA 78265 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021 |||| | |||||||| |||||||| ||||| || || |||||| | |||||| Sbjct 78264 CTCACTTGGGTGGTGAGGATTTCGACAACCGTCTCGTCAACCACTTTGTC-AACGAGTTC 78206 Query 196022 CGTCGAAAGAATAAGAA 196038 || ||||| ||||| Sbjct 78205 AAGCGCAAGAACAAGAA 78189 >seq25 Length=464062 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 387721 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 387780 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 387781 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 387840 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || ||||||||||| ||||| || ||||| || ||||| || |||||| Sbjct 387841 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 387900 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || |||||||| || || ||||| || || | || || |||||||| Sbjct 387901 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 387950 >seq24 Length=472585 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || ||||| |||||||| ||||| || Sbjct 84287 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCTTCC 84346 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||||| || ||||| |||||||| || || ||| Sbjct 84347 GACACTATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 84406 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || || || || ||||| || || || | || |||||| Sbjct 84407 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 84466 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||||| || || | || || |||||| Sbjct 84467 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTCCGCCTCCGTGGTGGT 84514 Score = 168 bits (186), Expect = 9e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| ||||| || || ||||| |||||||| ||||| || || || || || Sbjct 84584 GTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 84643 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| || || || ||||| ||||| || || || Sbjct 84644 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 84703 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 ||||||||||| ||||| || || || || ||||| ||||||||| | || |||||| Sbjct 84704 TTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAG 84763 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||||||| ||||| || || | ||||| |||||| Sbjct 84764 TCTACTCTCCACCTGGTCCTTCGTCTTCGTGGTGGT 84799 >seq22 Length=507059 Score = 131 bits (144), Expect = 2e-25 Identities = 474/733 (65%), Gaps = 19/733 (3%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || || || || ||||| ||||||| || | || || ||||| || ||||||||| Sbjct 335416 GCCGTCGTCACCGTCCCTGCCTACTTCAACGACGCTCAGCGTCAGGCTACCAAGGACGCT 335357 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | ||||| | || | ||| | || ||||| || || || || || || ||| Sbjct 335356 GGTCAGATTGCTGACCTTGATGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATT 335297 Query 195830 GCTTATGGTCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || ||||||| | |||| || | || || || |||||| ||||| Sbjct 335296 GCCTACGGTCTGGGCTCTGGCAAGACTGAGAAGGAGCGTAACGTCCTGATCTACGATCTT 335237 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| || ||||| || || |||| || | || ||| | ||| || ||| Sbjct 335236 GGTGGTGGTACTTTCGATGTTTCCCTGCTCAGCATCCAGGGCGGTGTCTTCACTGTCAAG 335177 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006 ||||| |||||||| || || | ||||| | || ||||| | | | | | | | Sbjct 335176 GCTACCGCTGGTGACACCCACTTGGGTGGCCAGGACTTCGACAC-CAACCTGTTGGACCA 335118 Query 196007 TTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCT 196063 || | | |||||| || ||| ||||| | | | | || | || | ||| Sbjct 335117 CTGCAAGAAGGAGTTCATCCGCAAGTCCAAGAAGG--ACCCCAGCAACGACCCCCGTGCT 335060 Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTC 196121 || || | || | ||||| || || |||||||| || || ||||| | || || | Sbjct 335059 CTCCGAAGACTCCGTACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCC 335002 Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181 | | | |||||||||| || | || ||||| |||||| | || || |||| Sbjct 335001 AGGCCACCATTGAGATTGACTCTCTCTTCGACGGCGAGGACTTCACCATGACCATCACCC 334942 Query 196182 GTGCACGTTTTGAAGAGTTAAACTC---TGATTTGTTTAGGAAGTGTATGGAACCTGTTG 196238 |||| ||||| || ||| | ||| | | || | | | | | || ||||||| Sbjct 334941 GTGCTCGTTTCGAGGAGCTCAACGCCAAGGCCTTCTCTGGTA---CCCTCGAGCCTGTTG 334885 Query 196239 AACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGG 196298 || || || || || ||||| ||| ||||| || |||||||| || | Sbjct 334884 CTCAGGTCCTCAAGGATGCCGCCATGGAGAAGAGCGCCGTTGAGGAGATTGTCCTCGTCG 334825 Query 196299 GAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAG 196358 | || || |||||||| || ||||| || || | || || |||||| | || Sbjct 334824 GTGGTTCTACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGA 334765 Query 196359 ATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTG 196418 | | | || | |||||||| ||||| || || || || ||||| ||||| ||||||| Sbjct 334764 AGCTCGAGAAGAGCATCAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCTG 334705 Query 196419 CTATTCTCTCAGG 196431 ||| ||||| || Sbjct 334704 GTATCCTCTCCGG 334692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859266930320