Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq281 84.2 4e-11 >seq281 Length=1703 Score = 84.2 bits (92), Expect = 4e-11 Identities = 284/420 (68%), Gaps = 38/420 (9%) Strand=Plus/Minus Query 24918 aaataatttaatatcacatatat-tattt-ttaaataattataagaataatttaaaaatg 24975 ||||||| |||| | | ||||| ||||| ||| |||||||||| |||| | |||||| Sbjct 913 AAATAATATAAT-TAATATATAAATATTTATTATATAATTATAAAAATATATAAAAAATA 855 Query 24976 tat---ttaccatcatcatataaat-tataaatataattataacaatcgaagtttatatt 25031 || | | || || |||| | | ||| |||| ||| | || | | || || |||| Sbjct 854 TAAAAATAAAAATAATAATATTATTATATTAATAAAATAAAAAAAGT--AATTTAATATA 797 Query 25032 ctccatt--atttttatattttttcaaataaattac-tatataatttagttattttt--a 25086 | ||| ||| | |||||| || |||||| || ||| | | || ||| |||| | Sbjct 796 TTTTATTTGATTATAATATTTATT--AATAAAGTAAATATTTTAAGTATTTACTTTTTAA 739 Query 25087 ta----ttaactaccagtatatatttaactatatttataaaaata-atactgtgatgata 25141 || |||| || | || ||||||| || | ||||||||| || | | || Sbjct 738 TAAAATTTAATTATTATTA-ATATTTA--TAAAACTATAAAAATTTATTTTATTTGTTTA 682 Query 25142 tattataataattaatattaatggaaatatt--ttatttttataaaataaaaataacaga 25199 |||||||| ||||| ||||| | ||| ||| | || ||||||||| || ||| | | Sbjct 681 TATTATAA-AATTATTATTATTATAAAAATTAATAATAAATATAAAATATAA-TAATATA 624 Query 25200 t-----ataattgataaatccatttaaaagaagatatattaatatattttatTAAAAG-T 25253 | |||||| |||||| || |||| || ||| ||| | |||||| |||| | Sbjct 623 TTTATTATAATTAATAAATTAATA-AAAATAATTTATTTTATT---TTTTATAAAAAAAT 568 Query 25254 AAATGATACCAACACCATATTATACAAGATAATTGCGTTAATTACAATTTATTTTTATTA 25313 |||| |||| || | || |||| | | || ||| |||| |||||||||||| || Sbjct 567 AAATAATACTAAAAAAATTATATATATTTTTATAAAGTTTATTAAAATTTATTTTTAATA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475194199350