Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22 140 1e-27 seq9 131 5e-25 seq3 125 2e-23 seq24 105 2e-17 >seq22 Length=507059 Score = 140 bits (154), Expect = 1e-27 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | |||| | ||| | |||||| |||||||| | |||||| ||||| Sbjct 395401 TCTTCCAGAGCTTTGACGAGACGTCTCTGAATGTAACCAGTCTCGGCTGTTTTGACAGCG 395460 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | ||| ||| || Sbjct 395461 GTATCAATAAGACCTTCACGACCAGCCATGGCGTGGAAGAAAAATTCTGACGGAGTAAGA 395520 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | | ||| |||| || || || || ||||| || || | ||| ||||||| Sbjct 395521 CCACGAAGATACGAGTTCTCTACAAAGCCGCGGGCCTCTGGAGAGTAATCGTCCTTGGTA 395580 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || || ||||| |||| ||||||||||| || || ||||| Sbjct 395581 AAATGGGGAAGCGTTCGGTACTTGAAGCCGAATGGAATACGCTTTCCTTCGACAATCTGC 395640 Query 302812 TGTCC 302816 ||||| Sbjct 395641 TGTCC 395645 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||| | ||||||||| Sbjct 394624 AGAATTTCCTTTAGACGAGGCACACCAAGTGTGACGTT---CTTGGAAGACACACCAGCA 394680 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | || || | || |||||||| || ||||||| Sbjct 394681 AAATGGAAAGTATTCAGTGTCATCTGGGTGGCGGGTTCACCAATGGACTGAGCCGCAAGA 394740 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 394741 ACACCAACCATTTCACCAGG 394760 >seq9 Length=716796 Score = 131 bits (144), Expect = 5e-25 Identities = 552/867 (64%), Gaps = 11/867 (1%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 ||||| ||| ||||| || || |||||| || | ||||||||||| |||| | Sbjct 53673 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGG 53614 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || |||||||||||||| || ||| | ||| | || ||||| |||| || || || || Sbjct 53613 TTGCAAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATA 53554 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | | || || |||| | |||||| |||||| ||| Sbjct 53553 GAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTTCCTTCCTTCTCATACTTC 53494 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 |||||||| | | || || || || || ||| || |||||||| | | ||| Sbjct 53493 TCATACAGCGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGG 53434 Query 155880 CAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| | || || | | |||||| ||| || | |||| | Sbjct 53433 CACATCAAAGTCCAGTCCAAGTTCTTCTCAA---CACGCTTCATGAACAGATCAGGGATC 53377 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | ||| ||| ||||| | || ||| || | |||||| ||||| || || Sbjct 53376 CAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGG 53317 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | ||| || || ||||| || ||||| || || || ||||| ||| Sbjct 53316 TCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGG 53257 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| |||||||| || || || | ||||| || |||||||| | ||||| || Sbjct 53256 CGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGG 53197 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 || ||||| ||||| || || ||||| ||| ||| | || || | | || | | Sbjct 53196 ATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGG 53137 Query 156174 TGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGT 156232 || | | || || |||||||| | |||| || ||||| || ||| ||| | ||| Sbjct 53136 TGGACGTTCAGGCCGATACCACCAG-CCATCTTGGAAATCATGGCACATGTCTTCAAAGT 53078 Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTG 156292 | | | ||||| ||||| || || | ||| | || |||| || | || Sbjct 53077 GTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTG 53018 Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352 || | | || || ||||||||||| || || || | ||||| |||| |||| | || Sbjct 53017 AGCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGA 52958 Query 156353 CATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412 ||| | ||||||||| | ||||| || || || | | || || Sbjct 52957 CATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCAC 52898 Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472 | ||| ||| ||||| || ||||| |||||| ||||||| | ||| || |||| Sbjct 52897 ACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGTTTCAGGAGATATGA 52838 Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||| || || || ||||| || Sbjct 52837 TCGCTCCAGTGTCTTGAAGCCGAAGTA 52811 >seq3 Length=984773 Score = 125 bits (138), Expect = 2e-23 Identities = 253/370 (68%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || || ||||| | |||| || || ||| || || | ||||| |||||| || Sbjct 414737 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAAC 414796 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| || || || ||| || || || || ||| |||| || | |||| | Sbjct 414797 ATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGTCAAGGAGCACAGCCAGC-G 414855 Query 133409 CA-CAAACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGG 133466 || | | || |||||||||||| | || ||||||| ||| ||||| | ||||||| Sbjct 414856 CAGCTACCTCTTCAACGCCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGG 414914 Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 | || || ||||| ||||||||| | ||||| ||||||||||| ||||||| Sbjct 414915 CCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTG 414974 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTG 133586 || ||||| || || ||||| || || || ||| || || ||||| || ||| | | Sbjct 414975 CCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAG 415034 Query 133587 GTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACA 133646 || | | ||||| ||| || || ||||| || || || | || |||| || |||| Sbjct 415035 GTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATGAGGGTCTGCACA 415094 Query 133647 CCGAATTTGC 133656 |||| ||||| Sbjct 415095 CCGACTTTGC 415104 >seq24 Length=472585 Score = 105 bits (116), Expect = 2e-17 Identities = 365/558 (65%), Gaps = 26/558 (5%) Strand=Plus/Plus Query 251443 GCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATA 251502 || || ||| | ||| | || || ||||| |||| | ||||||||||| ||||||| Sbjct 319860 GCGTCCGATACCTCAAAGAGTCGCTCCTTGAGGAAGGACGCTGCACCGTGTGCAATCATA 319919 Query 251503 CAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGC 251562 |||||||| ||||| || ||||| || ||||||||||| ||||| | |||||| | ||| Sbjct 319920 CAATCACGTTCCATCTCTCCGAATCGGAGACCACCATCTCGAGCACGACCCTCCACTGGC 319979 Query 251563 TGACGAGTGAGATTAACCATAGGACCGATGGAGC---GGCTATGTTGCTTATCATTTACC 251619 || ||||| | | || |||||| |||| ||| ||| ||| || | ||| Sbjct 319980 TGCCGAGTCATGATCTGCACAGGACCAC--GAGCTCTGGC-ATGGATCTTGTCGTCCACC 320036 Query 251620 ATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTG 251675 || || ||| ||||||||| ||| || || | ||| | ||| | || ||| Sbjct 320037 ATGTGGCGGAGTCGCTGGTAGTATGTTGGTCCAAAGAATACTTGTGCCCTGAGC---TTG 320093 Query 251676 CTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTG 251735 | |||||| | |||| ||||||| ||| || ||| | || || | || | Sbjct 320094 CG-TCCAGTATGGCCGTTGTACATAATCTCGAAGCCTCGAGACTGGTAGCCGTGCTTTCG 320152 Query 251736 TA---GCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTA 251792 | ||||||| | || | | || | |||| || | || || | Sbjct 320153 CAAGAGCTCTGAGACGGAGTCGACGGT---GACATCCGTAAAGGGAGTAGCATCACCCTC 320209 Query 251793 AAGACCCATTTGAA--TCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTC 251850 | ||| || || | | || || | || || ||| ||| || || || ||| Sbjct 320210 CATACC--TTCCAACGTAGAGACCTTACTTAGGAGACACTCGATCAAGTGAGCAATTGTC 320267 Query 251851 ATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTG 251910 |||||| ||||| || ||||| ||||| ||||| || ||| | || || || | | Sbjct 320268 ATACGAGACGGAATGGCGTGGGGGTTGATAATGATATCTGGTGTGAGACCTTCTCTTGAG 320327 Query 251911 AAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGA 251969 || |||||||||| | || ||| | |||||||| |||||||| ||||||||||| Sbjct 320328 AAAGGCATATCCTCCTG-TCGGTAAGTAACACCAATAGTGCCCTTTTGACCGTGACGAGA 320386 Query 251970 ACTGAACTTATCACCAAT 251987 | ||||| || ||||| Sbjct 320387 AGCAAACTTGTCTCCAAT 320404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810415230397