Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 140 4e-27 seq3 140 4e-27 seq82 111 2e-18 >seq9 Length=716796 Score = 140 bits (154), Expect = 4e-27 Identities = 221/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| ||||| || |||||||| | || |||||||| Sbjct 53242 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 53183 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||| | ||| || | ||| || | ||| Sbjct 53182 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCC 53123 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| |||||| || | || || ||| || | ||||||||||| |||| Sbjct 53122 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAAAGTGTCGTAGATACCCT 53064 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || |||| ||||||||||||| || ||||| || || || | |||| || | Sbjct 53063 CAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTAC 53004 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | ||||||||||| ||||| | || ||| || |||| | |||||| || ||| | Sbjct 53003 CAGCGTTGAAGAGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGACATGAGGTGGTATG 52944 Query 1630364 TGGCGAGCACGCGC 1630377 | | || || ||| Sbjct 52943 TCTCAAGGACACGC 52930 Score = 127 bits (140), Expect = 2e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||| | ||| || ||||||||||| || ||| | || |||||| |||| |||||||||| Sbjct 141304 CCAATTTCCTTGATATCAAGCCTCTTCTGGATGTCGGTTGCAAGACTGTCGCCAACATGA 141363 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 141364 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATCA 141408 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||| || ||||| || || ||| ||| ||||||||||||||||| || Sbjct 53378 TCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGA 53319 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| || | || | || || |||||||| ||||| |||||| ||||||||| || Sbjct 53318 GGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAG 53259 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 53258 GGCGCTTGTTGCCACC 53243 >seq3 Length=984773 Score = 140 bits (154), Expect = 4e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||||| |||||| |||||| |||||||||||||| | || ||||| |||||| Sbjct 415392 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 415333 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| | ||||||| ||| ||| ||||| | ||||||| || Sbjct 415332 AAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTGCCGAGAGCGACGAGCAGACGA 415273 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 |||||||||||||| |||||||| ||| || |||||||||||| | || || Sbjct 415272 TCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGAGCACAG 415213 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 || || | |||| ||| ||||| | |||||| |||||| || |||||||| Sbjct 415212 GGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCT 415158 Score = 138 bits (152), Expect = 1e-26 Identities = 211/291 (73%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| ||||| |||||||| || | ||| Sbjct 415087 ACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTT 415028 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| | || || ||| ||||| ||||| ||||| |||| Sbjct 415027 CTTGAGCCAGAAGATGGAGGCAAAGGCT-CCGCTGAAGAAGATACCCTCAACGGCAGCAA 414969 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT--TG-ATCCACTTCATCG 869354 || | | ||| |||| ||||||| | ||| ||||||| || |||||||| || | Sbjct 414968 AGGCAACGAGACGCTGGGCAAAG--GAAGAG----TCCTTGTCCTGAATCCACTTGATGG 414915 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413 ||||||||||||| || | | | || | || || |||||| ||||||| | | | Sbjct 414914 CCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGC 414855 Query 869414 TTTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | | |||||||| ||||||||||| || || || |||||||| Sbjct 414854 GCT--GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCTC 414806 >seq82 Length=156952 Score = 111 bits (122), Expect = 2e-18 Identities = 304/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 1852175 TTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCC 1852234 || |||||||| | || ||||||||||| |||||||| |||| ||||||||| ||| || Sbjct 25509 TTACGCTGGTCAAGACCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCGTCCAGGACC 25450 Query 1852235 TGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCTG 1852293 |||| | ||||||||||| | ||| ||| ||| |||| | ||| || |||| Sbjct 25449 TGCAGAATCGGGTAGAGCAGGCCCGACAGCGGCGCATTGTCGGT-CTGCTTAACAACCTC 25391 Query 1852294 AGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCACGTGCGCCGCGAGTCGGTAGAGGTC 1852350 ||| ||||| || ||| ||||| ||| | | || || || ||||| ||| Sbjct 25390 GGCGCCGGCCCTCTTGGCGTCGTGCTCGG---AAATGACCGACGACAGCTTGTAGACGTC 25334 Query 1852351 GAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAG 1852410 | ||| | || ||||||| | |||| | ||||||| ||| | | | | Sbjct 25333 CATGATGTATTCTGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAG-CTTCTCGG 25275 Query 1852411 CGG-CACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGT 1852469 || |||||||| | || || ||||| ||||| | || ||| | | || Sbjct 25274 TGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTACTCGACGCGCA 25215 Query 1852470 GTTCGACCAGGTCCCACGGCGTCTTGC-CGTTGTCGAGGTGGGCGTGCACGTCGGCAAAG 1852528 | |||||||| | | | || | ||| | |||||||||| | |||| | |||||| | Sbjct 25214 GCTCGACCAGCT-CGATGGGGGCTTTCAGGTTGTCGAGGAAGCCGTGGATGTCGGCGAGC 25156 Query 1852529 AGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAG 1852588 |||||| |||| | |||||||| || | | ||| | ||||| | ||| |||||| Sbjct 25155 AGGATCGTGACATGGCAGCCGGCGGCCAGGTACTGGGCGATTTTGATGGCGGGGACAAAG 25096 Query 1852589 TAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCC 1852623 ||||| ||| ||| ||| || | || ||||| Sbjct 25095 TAGCCGCAGTGAGGGCGGCCGGTTGTGGCGGTGCC 25061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107107933355777