Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-34 seq9 123 4e-22 seq7 107 3e-17 seq82 95.1 2e-13 seq58 89.7 8e-12 >seq3 Length=984773 Score = 163 bits (180), Expect = 4e-34 Identities = 240/333 (72%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| ||||| |||||||| || | ||| Sbjct 415087 ACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTT 415028 Query 794400 CTTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 ||||||||| ||||||| || | || | | ||| ||||| ||||| ||||| |||| Sbjct 415027 CTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCAACGGCAGCAA 414969 Query 794459 AGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515 || | ||||| |||| |||||| || |||| | ||| |||||||| || | Sbjct 414968 AGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA------ATCCACTTGATGG 414915 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| || ||||| || | | | || | || || |||||| ||||||| | || Sbjct 414914 CCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG--CT 414857 Query 794576 TCTC-GACCGGG-TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 | | | | | | ||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 414856 GCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTGGAT 414797 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || || ||||||||| || || ||||| Sbjct 414796 GTTCTCCATCATGATCTGGAAACCGTAGAAGCA 414764 Score = 147 bits (162), Expect = 3e-29 Identities = 186/254 (73%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| ||||||||| |||||| |||||| |||||||||||||| | | Sbjct 415409 TGACACCAGCCTTCTGATACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 415350 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | | |||| ||||||| |||| Sbjct 415349 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTGCCGA 415290 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| ||||| || |||||||| || ||||||||||| ||| || | |||||| Sbjct 415289 GAGCGACG--AGCAGACGATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTT 415232 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | || || ||| || | |||| | | ||||| | |||||| |||||| Sbjct 415231 CATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGC 415172 Query 794129 CTCGATGATGATCT 794142 || ||||||||| Sbjct 415171 ATCAGTGATGATCT 415158 >seq9 Length=716796 Score = 123 bits (136), Expect = 4e-22 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || | || |||| ||| ||||| || |||||||| | | |||||||| Sbjct 53242 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 53183 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||||| ||| || | ||| || | ||| Sbjct 53182 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCC 53123 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | |||| || |||||||| ||||| Sbjct 53122 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTC 53063 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| |||||||||||| ||| ||||| || || || | ||| || || Sbjct 53062 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTACC 53003 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| ||||| Sbjct 53002 AGCGTTGAAGAGAGTGGG 52985 Score = 109 bits (120), Expect = 9e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||| | ||| || |||||||| || || ||| | || |||||||| || |||||| | | Sbjct 141304 CCAATTTCCTTGATATCAAGCCTCTTCTGGATGTCGGTTGCAAGACTGTCGCCAACATGA 141363 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 141364 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATCA 141408 >seq7 Length=764989 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || ||| Sbjct 46652 GTACTTGGTAACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 46711 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || |||| ||||||||||| |||| Sbjct 46712 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 46743 >seq82 Length=156952 Score = 95.1 bits (104), Expect = 2e-13 Identities = 303/460 (66%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 2411512 AAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCG 2411571 |||| || |||||||| | || ||||||||||| |||||||| |||| ||||||||| Sbjct 25515 AAGAGTTTACGCTGGTCAAGACCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCGTCC 25456 Query 2411572 AGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGAC 2411630 ||| |||||| | |||||||| ||| ||||||| ||| |||| | ||| || Sbjct 25455 AGGACCTGCAGAATCGGGTAGAGCAGGCCCGACAGCGGCGCATTGTCGGT-CTGCTTAAC 25397 Query 2411631 CACCTGGGCGGCGGCC--TTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAG 2411688 |||| |||| ||||| || ||| ||||| ||| | | || || ||| || Sbjct 25396 AACCTCGGCGCCGGCCCTCTTGGCGTCGTGC--TCGGAAATGACCGACGACAGCTTGTAG 25339 Query 2411689 AGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGA 2411748 | ||| | |||| | | || | |||||| |||||| | ||||| | ||| Sbjct 25338 ACGTCCATGATGTATTCTGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAGCTTC 25279 Query 2411749 TCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCAC 2411808 || | ||||| | | || || ||||| ||||| | || ||| | | Sbjct 25278 TCGGTGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTACTCGACG 25219 Query 2411809 CGGTGCTCGACGAGGTCCCACGGCGTCTTGC-CATTGTCGAGGTGGGCGTGCACGTCGGC 2411867 || ||||||| || | | | || | ||| | ||||||||| | |||| | |||||| Sbjct 25218 CGCAGCTCGACCAGCT-CGATGGGGGCTTTCAGGTTGTCGAGGAAGCCGTGGATGTCGGC 25160 Query 2411868 AAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCAC 2411927 | |||||| | || | || ||||| || | | ||| | ||| | | ||| || Sbjct 25159 GAGCAGGATCGTGACATGGCAGCCGGCGGCCAGGTACTGGGCGATTTTGATGGCGGGGAC 25100 Query 2411928 AAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966 ||||||||| ||| || || ||| || | |||||||| Sbjct 25099 AAAGTAGCCGCAG-TGAGGGCGGCCGGTTGTGGCGGTGCC 25061 >seq58 Length=228698 Score = 89.7 bits (98), Expect = 8e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 ||| | || ||| | | |||||||| || ||||| || | || || | ||||||||| Sbjct 77824 GGCAGACATAAGCTAGTTATCCTCGACGAAGCCGATAGCATGACCTCCGGTGCCCAGCAG 77883 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 || || ||| |||||||||| ||| ||||||| || | ||||| | || |||||| Sbjct 77884 GCTCTTCGAAGAACCATGGAAATCTACTCCAACACCACCAGATTTGCATTCGCTTGCAAC 77943 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | |||||||| | || ||| || ||||| ||| | || | ||| Sbjct 77944 CAGTCAAATAAGATCATCGAACCGCTACAGTCACGATGCGCAATCCTTCGATATGCCAAG 78003 Query 2019384 CTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 | ||||||| || ||| | ||| || |||| ||||| || ||||||||| Sbjct 78004 TTGACCGACGAACAAGTCGTCAAGCGATTGATGCAGATCATCGAGGCGGAAAAGGTC 78060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916205871292259