Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9 199 4e-46 seq24 129 6e-25 seq25 122 8e-23 seq11 104 2e-17 >seq9 Length=716796 Score = 199 bits (220), Expect = 4e-46 Identities = 1110/1756 (63%), Gaps = 49/1756 (3%) Strand=Plus/Minus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGT 148103 || || |||||| |||||||||||| || |||||||| || | ||| | | ||| | Sbjct 54507 TTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGA 54448 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | ||||||||||| |||||| | |||||||| | Sbjct 54447 CGCTGAGAG---ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTG 54391 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 ||| ||| | || ||| | |||| || | || ||| | || | | Sbjct 54390 GGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAG 54331 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 ||| |||| || || | || || | | || || ||||| |||||||| || Sbjct 54330 AGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCA 54271 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 || || || ||| | || | |||| || | || || || | || |||||||| | Sbjct 54270 AGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCTAGG 54211 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | || | || ||||||||| || || |||| |||||| | |||| | Sbjct 54210 ATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGC 54151 Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCAC 148463 | || |||| ||| || | |||| |||||||| | || | |||| |||| Sbjct 54150 TCCTTGATTTGCTCCTTGAGGGAGTCCCACTCCCAGAGGTCAGTGGGCTTGACGTCCCAC 54091 Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCG 148523 | ||| |||| |||||||| ||||| |||| | | || || || || Sbjct 54090 AAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAGGGACCC 54031 Query 148524 TGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583 | | || | || | ||||| || || ||| ||| || ||||| ||| Sbjct 54030 TCGATCTTGGCAATCTCCATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAAAGATT 53971 Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCGCT-TTCGTACGGCATACGCAGCCGCACAAACGC 148642 ||| |||| | | ||| | | | |||| | || | |||||| | || || Sbjct 53970 TGCTTGTTCAACT-CGCGAGCTTCGGGTGATTCGAAGGGAAGACGCAGAGCGAGGAAAGC 53912 Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702 ||| ||||| ||||| || || || |||||||| ||||| ||||| | ||| || Sbjct 53911 GTCAGCAAGACCCTGGACACCGACACCAATGGGTCGGTGGCGGCTGTTGCTGTTGCGAGC 53852 Query 148703 GCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 ||| || ||| |||| ||| |||||||| || || || || || ||||||| Sbjct 53851 -CTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCT 53793 Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTA-----CTT-GTCATCTACGA----TGCAT 148811 | |||| | | ||| | || || || ||| || || ||| |||| Sbjct 53792 TGGTAACGTCGTGAAGCTTCTTGAAGTCATAGCAGCCTTCGTTATAGTCGACAAATGCAG 53733 Query 148812 CGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871 | | || | |||||| | ||||| || || ||| || ||||| |||||| Sbjct 53732 GG----AGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCA 53677 Query 148872 ACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931 | |||||||| ||| || ||| || ||| |||| |||||| || |||||||| Sbjct 53676 ATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTA 53617 Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 | |||||| || |||||||| |||||| | || |||||| || ||| | || | Sbjct 53616 CGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGG 53557 Query 148992 AT---GAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTG 149044 || | ||| ||| | ||| || || | ||||| | | | || |||| Sbjct 53556 ATAGAGTACCA---CAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTT----CCTTCCTT 53504 Query 149045 CTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 ||| || ||||||| |||||| | ||||| ||||| || | || || ||||| Sbjct 53503 CTCATACTTCTCATACAGCGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCA 53444 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 | || |||||||| | | ||| | || | | || |||||||| |||||||| Sbjct 53443 TTCGTTAGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATC 53384 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 || | |||||| ||| | ||||| || || | ||||| ||| ||| Sbjct 53383 AGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTT 53324 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 ||| |||| || | || | || |||||||| ||||| | ||| | || | || Sbjct 53323 GCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGC 53264 Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || ||||||| || ||||||||||||| | | ||||||| || ||||||| Sbjct 53263 TCCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAG 53204 Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCG 149401 ||| || || || ||| || ||||| || | |||| | ||| || || Sbjct 53203 CATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACG 53144 Query 149402 CACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC- 149458 | ||| ||||| | |||||| || || ||| | ||| || || || || ||| Sbjct 53143 GATACGGTGGACGTTCAGGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCT 53085 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 | || ||| |||||| ||||| ||||||||| ||||||| || ||| ||||| || Sbjct 53084 TCAAAGTGTC--GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGA 53027 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA-AT 149577 | ||| || | | || || || ||| | |||||| ||| || ||||| | Sbjct 53026 GGACAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGTAAAGAA 52967 Query 149578 ATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGC 149637 || |||| ||| | | ||| | ||| || || || || |||| || || | || Sbjct 52966 CTTGCTGG-ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGC 52908 Query 149638 CTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGA 149697 | | || || ||||| | ||| ||||| |||||||| | | ||| ||| ||| | Sbjct 52907 CAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGTTTCA 52848 Query 149698 GCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 | | || || ||||||||| |||| ||||| | ||||| ||||| ||| ||| Sbjct 52847 GGAGATATGATCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGT 52788 Query 149758 GGTCAATGGCGGCGTC 149773 | ||||||| | ||| Sbjct 52787 AGACAATGGCAGAGTC 52772 >seq24 Length=472585 Score = 129 bits (142), Expect = 6e-25 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||||| || ||| ||| ||||||||||||||| || Sbjct 84768 GTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCGAGCTGCTTACC 84710 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||||||||| || |||||||| |||||| ||| Sbjct 84709 AGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTT 84650 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || |||| | ||| || |||| |||| ||| ||||| || || || Sbjct 84649 GACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGT 84590 Query 133643 TTTTACGA 133650 || |||| Sbjct 84589 CTTGACGA 84582 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || || | | | |||||||| ||||||| Sbjct 84484 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 84426 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| ||||| ||||| |||||||| ||||| || Sbjct 84425 CAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACT 84366 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | |||||| |||| |||| ||| |||||||| || | Sbjct 84365 TCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTCTTGCCGGTGAGGG 84306 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 84305 TCTTGACGAAGATTTGCATGG 84285 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| ||| ||| || || Sbjct 85005 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC-GTCTTCCAG 84947 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || || ||||||||||| || || ||||| |||||||| || Sbjct 84946 CTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAAT 84887 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | || | || || | | |||||| || | |||| ||| ||||| Sbjct 84886 CTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGTCTTGCC 84827 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||| || || || |||||||| Sbjct 84826 GGTCAAAGTCTTGACAAAGATCTGCAT 84800 >seq25 Length=464062 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| | Sbjct 387918 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 387860 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 387859 CAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 387800 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 387799 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 387740 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 387739 TCTTGACGAAAATCTGCAT 387721 >seq11 Length=641957 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || || || || |||||| Sbjct 26506 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTG 26447 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 26446 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 26387 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 26386 GTCTTGCCCGTCAGGGTCTTCACGAAA 26360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418497708440