Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23]
381 sequences; 37,970,415 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq3 120 3e-22
seq25 95.1 1e-14
>seq3
Length=984773
Score = 120 bits (132), Expect = 3e-22
Identities = 348/520 (67%), Gaps = 17/520 (3%)
Strand=Plus/Plus
Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820
|| ||| ||||||| |||||| | |||||||| |||||||| || | || | | |
Sbjct 414887 CCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCC 414946
Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878
| ||| |||| | || || || || || || || | | || ||| | | || |
Sbjct 414947 TTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGG--TATCTTCTTCAGCGGAGCCT 415004
Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938
||||| |||| || | | || | | ||| | ||||| |||||||| ||| ||||
Sbjct 415005 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACG 415064
Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997
|| | ||||| || || || || || ||||| |||||||| || || || | | |
Sbjct 415065 AGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCT----CCACTCT 415120
Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056
| | |||| | | | ||| | |||| |||| || | | || || || ||
Sbjct 415121 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGAG-ATCATCACTGATGCCGTCAG 415179
Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116
||||| ||||||| || || | ||| || ||| || |||||||||||||||| ||
Sbjct 415180 AATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGC-CA 415238
Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175
|| ||| | || ||||||||||| || ||||||||| | || ||||| ||||
Sbjct 415239 CGCTGATGAAGCAGTACATTGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGG-CAAC 415297
Query 47176 -CGAA-ATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233
||| || | | | ||| || || || || || ||| | ||||| || || | ||
Sbjct 415298 GAGAAGATCTACAAGTCCTC-CAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGG 415356
Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG 47273
||| ||||| || |||||||| || || || |||||| ||
Sbjct 415357 CAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTATCAG 415396
>seq25
Length=464062
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| |||| || | | | ||||| || || |||||||||||||||| |||
Sbjct 387942 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 387883
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| |||||||| ||||| | | |||| | ||||| || || || || |||||
Sbjct 387882 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 387823
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || |||| | |||||| || |
Sbjct 387822 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 387763
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || || || || || | ||||||||||||
Sbjct 387762 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476608930139160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |