Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq25 95.1 1e-14 >seq3 Length=984773 Score = 120 bits (132), Expect = 3e-22 Identities = 348/520 (67%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| ||||||| |||||| | |||||||| |||||||| || | || | | | Sbjct 414887 CCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCC 414946 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878 | ||| |||| | || || || || || || || | | || ||| | | || | Sbjct 414947 TTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGG--TATCTTCTTCAGCGGAGCCT 415004 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 ||||| |||| || | | || | | ||| | ||||| |||||||| ||| |||| Sbjct 415005 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACG 415064 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997 || | ||||| || || || || || ||||| |||||||| || || || | | | Sbjct 415065 AGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCT----CCACTCT 415120 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056 | | |||| | | | ||| | |||| |||| || | | || || || || Sbjct 415121 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGAG-ATCATCACTGATGCCGTCAG 415179 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||||| ||||||| || || | ||| || ||| || |||||||||||||||| || Sbjct 415180 AATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGC-CA 415238 Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175 || ||| | || ||||||||||| || ||||||||| | || ||||| |||| Sbjct 415239 CGCTGATGAAGCAGTACATTGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGG-CAAC 415297 Query 47176 -CGAA-ATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233 ||| || | | | ||| || || || || || ||| | ||||| || || | || Sbjct 415298 GAGAAGATCTACAAGTCCTC-CAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGG 415356 Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG 47273 ||| ||||| || |||||||| || || || |||||| || Sbjct 415357 CAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTATCAG 415396 >seq25 Length=464062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| ||| Sbjct 387942 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 387883 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| | ||||| || || || || ||||| Sbjct 387882 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 387823 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 387822 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 387763 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 387762 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608930139160