Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 >seq1 Length=1198811 Score = 120 bits (132), Expect = 4e-22 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC-GCAGTCCACGTACCTGGCCCCAA 147289 ||||||||| ||||||| ||| |||||| ||| ||| || || || || |||| Sbjct 1128383 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCTGTTTGAGCA-TCGACATATTCTGCGCCAA 1128325 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 |||||| ||||||||||||||| || || || ||||||||| | | ||| | || || Sbjct 1128324 AGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGGGTGAGGC 1128265 Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 || | | | ||| |||||| |||| |||| | |||||||||| || || | || Sbjct 1128264 CCACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGC 1128205 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCC 147469 ||| | | ||| ||| |||| |||||||||||| ||||| | | || | | Sbjct 1128204 TGAGGGCGGTGGAGGAGGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGACGGCGC 1128145 Query 147470 TCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 ||||| | ||||||||| |||||||||| Sbjct 1128144 GGAGGAAGACTCGCTTGGTGGTGAGCAGGGGGA 1128112 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146878 AGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTG 146937 |||| ||||| ||||| || | | ||||||| || || | || | ||||| Sbjct 1128793 AGCTCAGGGAAAGGTCGCGGCTCGCGCTCCAGCTGTGTTCGAAGAGCATCGATGTGGTCA 1128734 Query 146938 AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACG 146997 | ||||||||| ||||| |||| | ||| ||| ||||| |||| || ||| Sbjct 1128733 ATGTAGACGTGTGCGTCTCCCATGACGTGGGTAAATGTTCCCGGTACAAGGTCGCAAACG 1128674 Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||||| | ||||| || ||||| | |||||| || |||||||| || | || |||||| Sbjct 1128673 TGGGCGAGCATGTGAGTCAGCAGTGCGTAGCTTGCAATGTTGAACGGAATACCGAGGCCC 1128614 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||| | || | ||| || |||||||| Sbjct 1128613 ATGTCGCAGGATCGCTGATATAGCTGGCA 1128585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583485221138400