Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 237 2e-56 seq9 123 4e-22 >seq3 Length=984773 Score = 237 bits (262), Expect = 2e-56 Identities = 369/511 (72%), Gaps = 20/511 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| ||||| ||||||||||||||| | || | Sbjct 414550 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 414608 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 414609 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 414668 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| || ||| ||| ||||| || ||||||||||| || Sbjct 414669 CTCACATCCTGGCCTTCTTT-GCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAG 414727 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| || | || ||||| ||||||||| Sbjct 414728 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 414787 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-CCC 1456070 || || ||||||||||| || |||||||| || || |||||||||||||||||||| | | Sbjct 414788 ATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGTCAAGGAGCAC 414847 Query 1456071 GGTC-GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | | || | ||||||| |||||| || || | || | | | || |||| Sbjct 414848 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGG 414905 Query 1456130 CCGACTGGGCGATGAAGTGGA-TCA--ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| || ||||||| ||| ||||||| ||| | ||||||| |||| || Sbjct 414906 CCGACTGGGCCATCAAGTGGATTCAGGACAAGGA----CTCTTC-CTTTGCCCAGCGTCT 414960 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTT 1456244 ||| | |||||| | ||| ||||| ||||| ||| | | || | || | ||||||| | Sbjct 414961 CGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCT 415019 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||| | || |||||||| || || Sbjct 415020 GGCTCAAGAAGAGAGGTCTCATGCCTGGCCT 415050 Score = 131 bits (144), Expect = 2e-24 Identities = 185/255 (73%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| || |||||| |||||| | ||||| | | |||| | || || | Sbjct 415158 AGATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTG 415217 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | || | |||||||||||||| ||| ||| ||||||||||| ||| |||||||| || Sbjct 415218 CTCTGCTGGGCATGAACGCCAC-GCTGATGAAGCAGTACATTGAGTTT-GTCGCCGATCG 415275 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||||| || |||||| || ||||| |||| | | ||||||| ||| | | Sbjct 415276 TCTGCTCGTCGCTCTCGGCAACG-AGAAGATCTACAAGTCCTCCAACCCCTTCGACTTCA 415334 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| |||||| |||| ||||||||| Sbjct 415335 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTATC 415394 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 415395 AGAAGGCTGGTGTCA 415409 >seq9 Length=716796 Score = 123 bits (136), Expect = 4e-22 Identities = 203/290 (70%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| ||| || ||| || | ||||| ||||| || || || || |||| Sbjct 52954 CATGTC-CAGCAAGTTCTTTACCCATGCCTCCCCCACTCTCTTCAACGCTGGTACCCCGC 53012 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | ||| || || ||||| ||| |||||||||||| ||| || ||||| |||| Sbjct 53013 AAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCT 53072 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| | ||| || || | || |||||| ||| || || ||||| | || Sbjct 53073 ACGACACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAACG 53132 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || ||| ||||| | ||| | || ||||||||||| |||||||| Sbjct 53133 TCCACCGTATCCGTGCCACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGTA 53192 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | ||||||||||| || || ||| |||| || | |||||||||||| Sbjct 53193 TCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTCGACCAG 53242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177774451849722