Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 156 6e-33 >seq9 Length=716796 Score = 156 bits (172), Expect = 6e-33 Identities = 400/608 (66%), Gaps = 6/608 (1%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| || || ||||||||||| || || Sbjct 53647 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAA 53588 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | ||||| ||| |||| | || | ||||| | ||| | | ||| || Sbjct 53587 GGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAGCTTCTGAGCTCGGAT 53528 Query 69471 TACGGTCTTGTAACGCTTCTCTT---TTTCATATTGTGTATATAGCCGTTCGAATTCATC 69527 |||||| || ||| ||| | ||||| | ||| ||| |||||||| || Sbjct 53527 A---GTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATTCTTC 53471 Query 69528 TCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATC 69587 || | ||| | | ||||| ||||| || || |||||||| | ||| | | Sbjct 53470 GCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGTCCAGTCCAAGTT 53411 Query 69588 ATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGT 69647 | || ||| || ||||| || ||||| || ||||| ||||| | || || || | || Sbjct 53410 CTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGC 53351 Query 69648 TCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATG 69707 | ||||| || || || || || || || ||||| | || ||||| || Sbjct 53350 ACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCGTG 53291 Query 69708 CCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTA 69767 ||| || || || || || || | | |||| || || || || || ||||| || | ||| Sbjct 53290 CCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACGTA 53231 Query 69768 TCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGT 69827 |||||||||||| || |||||| ||||| || || ||||| || || |||| || || Sbjct 53230 TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGT 53171 Query 69828 TCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGC 69887 || | ||| ||| || | || || ||| | || || || || || || Sbjct 53170 GCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGC 53111 Query 69888 CATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATC 69947 ||| || || || | ||||| ||||| ||||| || |||||||| ||||| || || Sbjct 53110 CATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTC 53051 Query 69948 TATCATGT 69955 |||||| Sbjct 53050 CTTCATGT 53043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905528596840