Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 224 1e-53 seq3 118 1e-21 >seq9 Length=716796 Score = 224 bits (248), Expect = 1e-53 Identities = 1016/1580 (64%), Gaps = 39/1580 (2%) Strand=Plus/Minus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || |||||||| || || || |||||| || | || || | | || |||||| Sbjct 54438 ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGG 54379 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| | | | ||| | | ||||||| | | ||||||||| ||| | | Sbjct 54378 ATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCG 54319 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 || || |||| || |||||||| ||||| || || ||| | || | Sbjct 54318 ACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGC 54259 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || || ||||||||||| || || | ||| || | ||| Sbjct 54258 TGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCTAGGATCTGGGAAGTG 54199 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| || ||||| || || | | | |||||| |||| ||| | ||||||||| | Sbjct 54198 CTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTGATTTGC 54139 Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||||||| ||||| | | || | || | || || | | ||||||| |||||||| Sbjct 54138 TCCTTGAGGGAGTCCCACTCCCAGAGGTCAG-TGGGCTTGA-CGTCCCACAAGTCAAACT 54081 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA-GGAACCTTGGGCTTCA 110941 | || | |||| || ||||| || |||| || | ||||| ||| ||| | ||| Sbjct 54080 GGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAGGGACCCTCGATCTT-- 54023 Query 110942 GCCAAT-TCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 | |||| || | ||||| |||| ||||| || || || |||||||| | || Sbjct 54022 GGCAATCTCCATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTT 53963 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCGA 111059 || ||| ||||| ||| || || | | || ||| | | || | || || | Sbjct 53962 CAACTCGCGAGCTTCGGGTGATTCGAA-GGGAAGACGCAGAGCGAGGAAAGCGTCAGCAA 53904 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 |||| || ||||| | |||||| |||| ||| || | || || || || || || Sbjct 53903 GACCCTGGACACCGACACCAATGGGTCGGTGGCGGCTGTTGCTGTTGCGAGCCTCCTGAA 53844 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || | || || |||| ||||| || || | ||| | ||| || | | Sbjct 53843 CGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGT 53784 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAGG 111235 | ||||| || | | ||| | || || | || | | | |||| | || || Sbjct 53783 CGTGAAGCTTCTTGAAGTCATA---GC-AGCCTTCGTTATAGTCGACAAATGCAGGGAGA 53728 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || ||||| ||||| ||||| ||| || | | |||||| | || || Sbjct 53727 GCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCG 53668 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 53667 GTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAA 53608 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||||| |||||| |||| | || ||||| ||||| | | || |||| | | Sbjct 53607 GCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTAC 53548 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 || | | || | ||| | | | | | || ||| ||| ||| ||||| || Sbjct 53547 CACAGCTTCTG-AGCTCGGATAGTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATA 53489 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAG 111532 || || || || || || ||| || ||| | || || || || || || || || Sbjct 53488 CAGCGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTAGGGCAC 53431 Query 111533 AAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | || ||| | ||| ||| |||||| ||||||||||| || || || ||||| | Sbjct 53430 ATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGA 53373 Query 111591 GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | | || || || | ||| || ||||||| | || ||||| || | ||| Sbjct 53372 GAGCGAGGAACAGGTCACGGGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCA 53314 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTT 111705 |||||||| | | ||| |||||||| ||||| || |||| || | | ||| | Sbjct 53313 AGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGC 53254 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | | | ||| | || | || || | || ||| ||| || || |||||||| || || Sbjct 53253 TTGTTG-CCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGAT 53195 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 ||||| | || ||| || || || ||| ||| |||| | | | || Sbjct 53194 GATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTG 53135 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || || || || ||||| |||||| ||| || || ||||| | | | ||| | Sbjct 53134 GACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTC 53075 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 |||||||| | || ||| ||||| || | | |||||||| ||||| ||| | Sbjct 53074 GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGC 53015 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 | || |||||||| |||||||| || || | || || | | | | |||| |||| Sbjct 53014 TTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATG--GGTAAAGAACTTGCTGGAC 52957 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||||||||| | |||| ||||||| || || | ||| | || || Sbjct 52956 ATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACA 52897 Query 112064 CGCATGAACATGTACTGTGG 112083 ||||| | ||||| |||||| Sbjct 52896 CGCATAATCATGTGCTGTGG 52877 >seq3 Length=984773 Score = 118 bits (130), Expect = 1e-21 Identities = 346/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| ||||||||||| || || || || || || |||||| || || Sbjct 415104 GCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCA 415045 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 415044 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 414985 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837 ||||| || ||||| |||| || || | ||| ||||| ||| | ||| | | || Sbjct 414984 CCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGAAT 414926 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || || ||||| | |||||||| ||| || || | || | ||||| | || Sbjct 414925 CCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 414866 Query 122898 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956 | | ||| | | | | ||||| | ||| |||| || | || || || | Sbjct 414865 GAGGTAGCTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCT 414807 Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 414806 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 123016 TGAACCTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 |||||||| |||| ||| | | ||||| ||||| || ||||| |||| Sbjct 414747 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 414689 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 123131 |||||| |||||||||| ||||| | ||| || | || |||| || | ||||| Sbjct 414688 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 414629 Query 123132 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 414628 GTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 414587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029008997600