Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 235 7e-57 seq3 149 8e-31 seq37 89.7 6e-13 >seq9 Length=716796 Score = 235 bits (260), Expect = 7e-57 Identities = 1095/1719 (64%), Gaps = 43/1719 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| || ||| ||| ||||| | || ||||||||||| || |||||||| | Sbjct 54632 TGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATGCCAGTCTTGAGAC 54573 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | || ||| | |||| Sbjct 54572 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATTGTGGGATCCTTCATGT 54513 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||||| ||||| || || ||||| || || || || | ||| | | | Sbjct 54512 GAATGTTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 54453 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | | ||| ||||| |||||| |||| ||| ||| || || | || || | Sbjct 54452 TGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 54393 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 || || ||||| || || | | | ||| | | ||||||| | | |||| Sbjct 54392 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 54333 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCAC 118161 |||| ||| | | ||||||| |||| || |||||||| ||||| | Sbjct 54332 AGAGGCCAGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGC 54276 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || ||| |||| | | ||||| |||| ||||| ||||| ||||| |||||||| | Sbjct 54275 CAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGC 54216 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 | | ||| |||| ||| ||| ||||||||||| || | ||| | ||||| || | || Sbjct 54215 CTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATAC 54156 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | ||| | || | |||||||| | |||||| || || | | | || | | Sbjct 54155 CGTGCTCCTTGATTTGCTCCTTGAGGGAGTCCCACTCCCAGAGGTCAGTGGGCTTGACGT 54096 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 ||||| ||||||||||| || |||| || || || ||||||| |||| |||||| | Sbjct 54095 CCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAGG 54036 Query 118402 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAA 118461 | ||||| | || || | || | ||||| ||||| ||||| || || || |||| Sbjct 54035 GACCCTCGATCTTGGCAATCTCCATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAA 53976 Query 118462 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATA 118520 | || | |||| | || ||| || || || | || | ||| | | Sbjct 53975 AGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAGGGAAGAC-GCAGAGCGAGG 53917 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || | || || ||||| |||||||||| ||||| || || || | | || || Sbjct 53916 AAAGCGTCAGCAAGACCCTGGACACCGACACCAATGGGTCGGTGGCGGCTGTTGCTGTTG 53857 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 ||||| || ||||| || | ||| |||||| | | || || || | || Sbjct 53856 CGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACC 53797 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATAC 118700 ||||| || | || |||||||| | | | ||| | | || | | | |||| | Sbjct 53796 ACCTTGGTAACGTCGTGAAGCTTCTTGAAGTCATAGCAGCCTTCGTTATAGTCGACAAAT 53737 Query 118701 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 118760 ||| || || | || |||| || || |||| | ||| || ||| |||||| Sbjct 53736 GCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCA 53677 Query 118761 ATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820 || || || ||||| | ||| || || ||||| |||| |||||| || || ||| Sbjct 53676 ATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTA 53617 Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 118880 ||| || |||||||||||||||||| | || | || ||||| || |||| || || Sbjct 53616 CGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGG 53557 Query 118881 ATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT---CTTC--- 118933 |||| | ||| | | || | |||| | | ||| ||| || |||| |||| Sbjct 53556 ATAGAGTACCACAGCTTCTG-AGCTCGGATAGT---CTTG---CGACCCTTTCCTTCCTT 53504 Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 118993 ||| ||||| || || || || || ||||| || | || | || || || || Sbjct 53503 CTCATACTTCTCATACAGCGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGG-GC 53445 Query 118994 CTT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAGAG 119050 || | ||||| | | || ||| | ||| || |||||| ||||||||||| || Sbjct 53444 ATTCGTTAGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAG 53387 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110 || ||||||||||| || ||| || || || || | ||||| | || || || Sbjct 53386 ATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTT 53327 Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170 || | || | || || | | ||| |||||||| || || ||||| | || | Sbjct 53326 CTTGCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAA 53267 Query 119171 TGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | || | | || ||| |||||| || || || |||||| ||| || || Sbjct 53266 GGCTCC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGAC 53210 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 |||||||| || |||||||| | ||| || || || || ||| ||| | Sbjct 53209 TCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGT 53150 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 ||| | || | ||||| || || || ||||| || ||| ||| || || || || Sbjct 53149 GGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACA 53090 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | | | | || ||||||| || || || ||| |||| | | | |||||||| Sbjct 53089 TGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCA 53030 Query 119405 GCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463 |||| ||| || || || |||||||||||||||||||| || | || ||| | Sbjct 53029 TGAGGACAGCTGA-GCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGG--GT 52973 Query 119464 ACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 | | | |||| |||||| || ||| ||||| | ||| Sbjct 52972 AAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGAC 52934 >seq3 Length=984773 Score = 149 bits (164), Expect = 8e-31 Identities = 531/815 (65%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || ||||| ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 415393 ATACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCAT 415334 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| || || | || | || | | | | ||| |||| Sbjct 415333 GAAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTGCCGAGAGCGAC-GAGCAGAC 415275 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | ||| |||||||||||| |||| | || |||||| || | || || Sbjct 415274 GATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGAGCAC 415215 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||| || || | |||| ||| ||| || || || || | ||| | Sbjct 415214 AGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCTCAC 415155 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACT 130022 | || ||||| ||| | | || || || | || || || | |||| | Sbjct 415154 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGT 415098 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| |||||||| ||||| ||||| || || || |||||| ||| || ||||||| Sbjct 415097 CGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 415038 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| | |||||| | |||||| || | ||| | || ||||||||| ||||| | Sbjct 415037 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAA 414978 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 130201 | || || |||| |||||||| |||||||| | | | |||| | || |||||| Sbjct 414977 CGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGAATCCACTTG 414919 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-GTTC 130260 || ||||| | ||||| || || || || | ||||| || || | |||| || Sbjct 414918 ATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 414859 Query 130261 CTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCAT 130319 || | | ||| | || |||| ||| | || ||||| || || || ||| | Sbjct 414858 CTGCGCTGGCTG--TGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGT 414801 Query 130320 GGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACC 130378 ||| | | ||| || | ||| | ||||||| | || || ||| ||||| ||| Sbjct 414800 GGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACC 414742 Query 130379 TCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 130438 || | ||| | | ||||| ||||| || ||||| ||||||| || Sbjct 414741 TCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAG 414682 Query 130439 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCA 130495 |||||||| | ||||| | || || | ||||||| || | |||||||||| Sbjct 414681 GCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGC 414622 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||||| || ||||| | |||||| || ||||| Sbjct 414621 AGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 414587 >seq37 Length=345955 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 179089 CCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCC 179148 ||||| | ||||| ||||| |||| |||||||||||||| |||| |||| | ||| Sbjct 176550 CCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGAGCC 176609 Query 179149 AACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCC-GC 179207 || |||||||| | | || ||||| || ||||| ||||| || | | |||| | Sbjct 176610 AATCCAACAATCGTCTGCTGCAGCGAGACATCGCCGTGGTGGTAGGCGGTC-AGTCCAGA 176668 Query 179208 CACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCA 179264 || || | |||| || | | |||| ||||||||||| | ||| | | ||| || Sbjct 176669 GACGTAACCAGCCAGCTCCACAACCT---TCTCATCCTTGACCACGTTTCTCTTGAAACA 176725 Query 179265 CGCATACATCACCTTTCTTTGTGAAGGCTT 179294 || |||| |||||||| ||| |||||| Sbjct 176726 AGCGTACAGCACCTTTCGTTGACCAGGCTT 176755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432254702360