Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 286 4e-72 seq3 158 1e-33 seq37 91.5 2e-13 >seq9 Length=716796 Score = 286 bits (316), Expect = 4e-72 Identities = 979/1499 (65%), Gaps = 39/1499 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||||| | || || || || ||||||| |||| Sbjct 52877 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 52936 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| |||| | | | | || || | || || |||| Sbjct 52937 CTTGAGACATACCACCTCATGTCCAGCAAGTTCTTTACC--CATGCCTCCCCCACTCTCT 52994 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | | || ||||| |||||||| | | || ||||| | Sbjct 52995 TCAACGCTGGTACCCCGCAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 53054 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||| | ||| | | | ||||| || || ||| ||||| Sbjct 53055 ACAGCATTGAGGGTATCTACGACACTTTGAAGACATGTGCCATGATTTCCAAGATGGCTG 53114 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | | |||| ||| ||| || || | Sbjct 53115 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCCACGGGCTCTTACATTGCCGGCACCA 53174 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||| || || |||||||| || || ||| ||| || | || | Sbjct 53175 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 53234 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | ||| | | | | ||| | | || |||| || ||||| |||||| Sbjct 53235 TCGACCAGGGTGG-CAACAAGCGCCCTGGAGCCTTTGCCATCTACCTCGAGCCTTGGCAC 53293 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || ||| | | ||||||||||| | || ||||| || | || |||| || | Sbjct 53294 GCTGATGTTTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCC 53353 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG- 104754 || || || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| Sbjct 53354 CGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAAC 53413 Query 104755 -TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 ||| | ||| || | | || || || || || ||||| || | || ||| ||| Sbjct 53414 TTGG--ACTGGACTTTGATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTATGGC 53470 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || || || || || || || ||||| ||| | ||||| || | | || ||| Sbjct 53471 -GAAGAATTCGAGGCGCTGTATGAGAAGTATGAGAAGGAAGGAAAGG-GTC-GCAAGACT 53527 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | |||| | || | ||||| | |||| || || | || || |||||||| | || Sbjct 53528 ATCCGAGCT-CAGAAGCTGTGGTACTCTATCCTAGAGGCCCAGACTGAGACTGGCAACCC 53586 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||||||||| || || || |||| ||||| || || ||||| |||| || Sbjct 53587 CTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGAACCAT 53646 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| ||||| || || ||| | || | | | | || ||| ||||| Sbjct 53647 CCGCAGCTCCAACCTCTGCACCGAGATCATTGAGTACTCTGCCCCTGACGAGGTCGCTGT 53706 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTT 105106 || ||| | || || | |||||||| | ||| || | | | || ||| | | | Sbjct 53707 CTGCAACTTGGCCTCTTTGGCTCTCCCTGCATTTGTCGA-CTATA-ACGAAGGCTGCTAT 53764 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | || || ||||| ||||| || || | ||||| ||| | | || Sbjct 53765 GACTTCAAGAAGCTTCACGACGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATC 53824 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || | ||||||||| || ||||| || || | | ||||| || ||| Sbjct 53825 GATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGCAACAGCCGCCACCGACCCATT 53884 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285 ||| ||||||| |||||||| || || | ||| | || || || | | || || || Sbjct 53885 GGTGTCGGTGTCCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCCTTCGAATC 53943 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 |||||| || | || || || |||||||| || || ||||| || ||||| Sbjct 53944 ACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACTATCTACCACGCTGCCCTTGA 54003 Query 105346 GGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||| | || ||| | || || | || ||||| ||||| | || |||| || || Sbjct 54004 GGCA--TCCATGGAGATTGCCAAGATCGAGGGTCCCTATGAGTCATTCAAGGGATCACCC 54061 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463 || || |||| | || || ||||| ||||||| | || ||| | || || Sbjct 54062 GCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGACGTCAAGCCCACTGACCTCTGGGAG 54121 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||||| | |||||||| | ||||||||| | ||| |||| |||||| | ||| | || Sbjct 54122 TGGGACTCCCTCAAGGAGCAAATCAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCC 54181 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || ||| ||| | || ||| | || || ||||||||||| || |||||| Sbjct 54182 CCCATGCCCACTGCCAGCACTTCCCAGATCCTAGGCAACAATGAATGCTTCGAGCCCTAC 54241 Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAG 105640 || | |||||||| | | || | ||| || || ||||| | ||||||| | | Sbjct 54242 ACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGG 54301 Query 105641 CATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699 | |||| |||| || || | ||| ||||||||| | | ||||||| | | ||| Sbjct 54302 CTTCTCAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 54357 >seq3 Length=984773 Score = 158 bits (174), Expect = 1e-33 Identities = 356/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || || ||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 414587 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 414646 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||||| ||||| || ||| Sbjct 414647 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 414706 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 414707 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 414765 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| | |||| Sbjct 414766 CTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCA 414824 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 | |||| || | ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 414825 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 414882 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || |||| ||||| || || ||||| || |||||| || | |||| | | | Sbjct 414883 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTC 414942 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||| |||| ||| | || ||||| |||||||||||||||||| || Sbjct 414943 -TTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAG 415001 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | |||||||||||| ||||||||||||| || || |||||||| Sbjct 415002 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 415061 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 415062 ACGAGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGC 415104 >seq37 Length=345955 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532 || || | |||||| | ||||| ||||| || | |||||||||||||| |||| || Sbjct 176541 AGTCGAGAACCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 176600 Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592 || | ||||| |||||||| | | || ||||| || ||||||||||| || || Sbjct 176601 TCTTGAGCCAATCCAACAATCGTCTGCTGCAGCGAGACATCGCCGTGGTGGTAGGCGGTC 176660 Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 168648 | | ||| | | |||| || |||| | |||||||||||| | ||| | Sbjct 176661 AGTCCAGAGACGTAACCAGCCA---GCTCCACAACCTTCTCATCCTTGACCACGTTTC-T 176716 Query 168649 GTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 168708 | ||| || ||||||| ||||| ||||| |||||| | ||||| ||| | Sbjct 176717 CTTGAAACAAGCGTACAGCACCTTTCGTTGACCAGGCTTCAATCCATCAATCATTGACGG 176776 Query 168709 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 168764 ||| || | | ||||||| |||||| | ||| ||||||| ||||||| Sbjct 176777 GATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 176832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258022220440