Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq57 168 2e-36 seq24 138 3e-27 seq22 107 6e-18 seq25 96.9 1e-14 >seq57 Length=232149 Score = 168 bits (186), Expect = 2e-36 Identities = 483/733 (66%), Gaps = 16/733 (2%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG-TGTAGA 349263 || ||||| | |||||||| || ||||| || | | | | | | || || ||| || Sbjct 78919 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 78861 Query 349264 AATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAAC 349323 || ||||| || || || |||||| |||| || || || | |||||| || ||||| || Sbjct 78860 CATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 78801 Query 349324 TGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGT 349383 |||||| ||||||||||| | || || || || | || || || | || || || Sbjct 78800 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 78741 Query 349384 TTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTG 349439 || || || |||||| | |||||| | | || || ||| | || || ||| Sbjct 78740 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCTCCGACCCCGAGGTC----CAGGCTG 78685 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 | | || || || || || | |||| | | ||| || | || || | | |||| Sbjct 78684 ACATGAAGCACTTCCCCTTCAAGATTGT-CGACAAG--GGCGGCAAGCCCGTCGTCGAGG 78628 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || | || || || || || | | || ||||| || || || || ||| | | Sbjct 78627 TCGAGTTCAAGGGCGAGACCAAGA-ACTTCACCCCCGAGGAGATCTCCTCCATGATCCTG 78569 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | ||||| || || | |||| || || | | || || || Sbjct 78568 ACCAAGATGCGTGAGACCGCTGAGGCCTACCTGGGTGGCACCGTCAACAACGCCGTCGTT 78509 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || ||||||| || || || ||||| || |||| Sbjct 78508 ACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGATGCCGGTCTCATT 78449 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || ||||| ||||| || ||||| || || Sbjct 78448 GCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGT 78389 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | || || || | || || || ||| | |||||||||||| Sbjct 78388 CTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACT 78329 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | ||||| ||| Sbjct 78328 TTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGT 78269 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || ||||| || || |||||||| || ||||| || || Sbjct 78268 GACACTCACTTGGGTGGTGAGGATTTCGACAACCGTCTCGTCAACCACTTTGTCAACGAG 78209 Query 349919 TTTAAGCGTCAAG 349931 || ||||| |||| Sbjct 78208 TTCAAGCG-CAAG 78197 >seq24 Length=472585 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || |||||||| || || || || || || Sbjct 84517 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 84458 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 84457 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 84398 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || ||||| || || | || || | || Sbjct 84397 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTC 84338 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 84337 CACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 84287 Score = 111 bits (122), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || ||||| Sbjct 84802 CATACCACCACGAAGACGAAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATC 84743 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || ||||||||||| ||||| ||||| || || Sbjct 84742 GCTCAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGG 84683 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || ||||| | ||| |||| || Sbjct 84682 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTC 84623 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 84622 GACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 84584 >seq22 Length=507059 Score = 107 bits (118), Expect = 6e-18 Identities = 104/133 (78%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| |||| || ||| || || | ||||||||||| ||||||||||| Sbjct 394639 CGAGGCACACCAAGTGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAAGTATTC 394695 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||| |||||||| ||||| || |||| ||| ||||||||||| Sbjct 394696 AGTGTCATCTGGGTGGCGGGTTCACCAATGGACTGAGCCGCAAGAACACCAACCATTTCA 394755 Query 377578 CCAGGATTGACAA 377590 ||||| || |||| Sbjct 394756 CCAGGGTTAACAA 394768 >seq25 Length=464062 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || Sbjct 387948 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 387889 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| | || ||||| || || || Sbjct 387888 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGG 387829 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 387828 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 387769 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 387768 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247003190943