Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 251 8e-62 seq37 102 9e-17 >seq9 Length=716796 Score = 251 bits (278), Expect = 8e-62 Identities = 373/527 (71%), Gaps = 4/527 (1%) Strand=Plus/Plus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 |||||||| |||||| ||| || | ||| | |||| |||||| || ||| | || || Sbjct 52930 GCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAGTTCTTTACCCATGCCTCCCCCAC 52989 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || |||||||||||||| || ||||| |||| ||||||||||||| ||||| Sbjct 52990 TCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAA 53049 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || || || |||||||| || | ||| |||||| || |||||| Sbjct 53050 GGACGACAGCATTGAGGGTATCTACGACACTTTGAAGACATGTGCCATGATTTCCAAGAT 53109 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470 | | ||||||||||| | || || | ||| |||||| | ||| | || Sbjct 53110 GGCTGGTGGTATCGGCCTGAACG--TCCACCGTATCCGTGCCACGGGCTCTTACATTGCC 53167 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| | || | || ||| | || ||||| || |||||||||||||| ||| Sbjct 53168 GGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCC 53227 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 | |||||| |||||||||| |||||| || | || ||||||||||||||||| Sbjct 53228 AGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCCATCTACCTCGAGCCT 53287 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| || || | ||||| || || || || ||| || || | |||||| | Sbjct 53288 TGGCACGCTGATGTTTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTC 53347 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 || |||||||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 53348 CGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAG 53407 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||| || ||| ||| |||||||||| ||||| ||||| ||||| Sbjct 53408 AAGAACTTGGACTGGACTTTGATGTGCCCTAACGAATGCCCTGGCCT 53454 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | ||| |||||||||||||| ||||||| |||| || |||| Sbjct 54467 GCCGACCGTGGTGCTTTCATTGACCAGTCCCAGTCCTTGAACATTCACATGAAGGATCCC 54526 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 54527 ACAATGGGCAAGATCACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACTGGC 54586 Query 55907 ATGTACTATCTGCGGACCC 55925 |||||||| || || |||| Sbjct 54587 ATGTACTACCTACGTACCC 54605 >seq37 Length=345955 Score = 102 bits (112), Expect = 9e-17 Identities = 193/282 (68%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||| | || || || || || ||||||| || |||| || || |||||||| | Sbjct 176485 ACGGAGACAGTCGTGTAAAGATATAACGAGGACTAGCAGAGTCTGAACCGCCAGCAAGTC 176544 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | ||| || | ||||| ||||| | || ||| | ||||| | ||||||||||| || Sbjct 176545 GAGAACCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTT 176604 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 ||||||| |||||||| || || | || || ||||| || || ||| | Sbjct 176605 GAGCCAATCCAACAATCGTCTGCTGCAGCGAGACATCGCCGTGGTGGTAGGCGGTCAGTC 176664 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCT--TCATGTCTGACGTCAGGTTCTTCTTGAG 117528 | | ||||| || ||||||| | |||| |||| |||| || ||| |||||| Sbjct 176665 CAGAGACGTAACCAGCCAGCTCCACAACCTTCTCATCCTTGAC--CACGTTTCTCTTGAA 176722 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 || || || | |||||| || |||| ||||||| ||||| Sbjct 176723 ACAAGCGTACAGCACCTTTCGTTGACCAGGCTTCAATCCATC 176764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 152062 CCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCG 152121 || || || || || | ||||| | ||| ||||||||||| ||||| ||||| | | Sbjct 176532 CCGCCAGCAAGTCGAGAACCAAAGTTACCACTGGGCTCGAGGACGTTGATATTGTTTGAG 176591 Query 152122 CCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGA 152181 ||||| || | |||||||| |||||||| |||||| | || |||||||| Sbjct 176592 CCCACAAAGTCTTGAGCCAATCCAACAATCGTCTGCTGCAGCGAGACATCGCCGTGGTGG 176651 Query 152182 TACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGG 152241 || || ||| | | | || ||| || |||| || | | |||||| ||| | || | Sbjct 176652 TAGGCGGTCAGTCCAGAGACGTAACCAGCCAGCTCCACAACCTTCTCATCCTTGACCACG 176711 Query 152242 TTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || |||||| ||| ||||| | |||||| || || || ||||| || || Sbjct 176712 TTTCTCTTGAAACAAGCGTACAGCACCTTTCGTTGACCAGGCTTCAATCCATC 176764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213393883800