Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 291 9e-74 seq24 188 8e-43 seq25 165 9e-36 seq11 125 8e-24 seq37 82.4 9e-11 >seq9 Length=716796 Score = 291 bits (322), Expect = 9e-74 Identities = 1130/1751 (65%), Gaps = 51/1751 (3%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || ||||||||| | |||| Sbjct 54609 GCCTGGGTACGTAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 54550 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | |||||| | || |||| ||||||| ||||| ||||| Sbjct 54549 ATGCTGGTGATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCAAGGACTGGGACTGG 54490 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 |||||||| ||||| || || | ||| | | || |||| | | | || ||||| Sbjct 54489 TCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGACGCT-GAGAGATCTCCCA 54431 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| || | || | ||||||| || | | | | Sbjct 54430 AACAGTCTTGTACAGGGCCTT--GATG-TCGGCGGGAATGTTGGGAATGTTCTGGATAGA 54374 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || |||| | || |||| || | ||||| ||| | | || Sbjct 54373 ACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAG 54314 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | ||| | | ||| || | || |||| || || ||| || ||| | Sbjct 54313 ATCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCAGCAAGGACACGTCGCTG 54257 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || || ||||| || |||||||| | ||||| Sbjct 54256 GTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCTAGGATCTGGGAAGTGCT 54197 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| ||| |||| | || || || | ||||||| |||||| | ||| Sbjct 54196 GGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTGATTTGCTC 54137 Query 80502 ---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553 | | | || || || | ||| ||| |||| |||||| ||| | Sbjct 54136 CTTGAGGGAGTCCCACTCCCAGAGGTCAGTGG----GCT-TGACGTCCCACAAGTCAAAC 54082 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||||| || || || || || ||| ||| | ||| || || ||||| ||||| Sbjct 54081 TGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAGGGACCCTCGATCTTG 54022 Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 || | ||| || || |||||| ||||| || || |||||||| ||||||| Sbjct 54021 GCAATCTCCATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTTC 53962 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | |||| || | || ||||| | | | || | ||| ||||||| || Sbjct 53961 AACTCGCGAGCTTCGGGTGATTCGAAGGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGA 53902 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792 ||||| || |||| | || || |||||||| |||| | | || |||||| ||| Sbjct 53901 CCCTGGACACCGACACCAATGGGTCGGTGGCGGCTGTT-GCTGTTGCGAGCCTCCTGAAC 53843 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| |||| |||||||| |||||| ||||| || ||| ||| ||||| || Sbjct 53842 GGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGTC 53783 Query 80853 ATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906 ||||| |||| ||||| | || ||| | |||||||| || || || Sbjct 53782 GTGAAGCTTCTTGAAGTCATAGCAGCCTTCGTTATAGTCGACAAATGCAGGGAGAGCCAA 53723 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || |||| ||||| || || ||||| |||| | | |||| | ||| || ||||| Sbjct 53722 AGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGCA 53663 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || || || || |||||||| |||||||| ||| ||||||||| || Sbjct 53662 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATC 53603 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 |||||| |||| | ||| | || ||||| ||| | || ||||| | || ||| | Sbjct 53602 CTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAG 53543 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 || | || || |||||| || ||||| | ||||||| | || ||| Sbjct 53542 CTTCTGAGCTCGGATAGTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGC 53483 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | ||||| | | || | | ||| ||| ||| | ||||| |||||||||||||||| Sbjct 53482 C-TCGAATTCTTCGCCATAGCAGT-CAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAA 53425 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 |||||| || ||||| ||| ||||||||| |||||||||||||| ||| | Sbjct 53424 GTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGG 53365 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 |||||||| ||| || |||| || | || ||||| ||| | || || || || Sbjct 53364 AACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCA 53305 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCA 81381 | | || || ||||| ||||| || || | ||| | | || ||| |||| Sbjct 53304 AAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCA 53245 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 ||||||| |||||| | |||||| ||| || || || | ||| ||||||||||| | Sbjct 53244 CCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTG 53185 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGA 81501 || |||||| || || | || || ||| |||| || | | || || Sbjct 53184 GAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGG 53125 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 ||||| ||||| | | ||| |||||| ||||| |||| || || || || ||| Sbjct 53124 CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCC 53065 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 || ||||| || | |||||||| | || ||| || |||| |||| |||| | | Sbjct 53064 TCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA--GCTTGCGGGG 53007 Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC-GGTTTGACATCAGGTCA 81678 || || ||||| || || |||| || || | ||| ||| | | ||||| |||| Sbjct 53006 TACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGT-AAAGAACTTGCTGGACATGAGGTGG 52948 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 || || || ||| || ||| | ||| || || || | ||| |||||||||| | Sbjct 52947 TATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATC 52888 Query 81739 ATGTACTGGGG 81749 |||| ||| || Sbjct 52887 ATGTGCTGTGG 52877 >seq24 Length=472585 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 84287 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCTTCC 84346 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| | || ||||||||||||||||| |||||||| |||||| Sbjct 84347 GACACTATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 84406 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| |||||||||||||||| || || || | ||||| || Sbjct 84407 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 84466 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | || || || ||||| Sbjct 84467 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 84513 Score = 185 bits (204), Expect = 1e-41 Identities = 172/216 (80%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||| ||||| |||||| |||| ||||| Sbjct 84584 GTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 84643 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| || Sbjct 84644 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 84703 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 |||||||||||||| |||||||| | ||| ||||| ||| || || || |||| ||||| Sbjct 84704 TTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGC-GATTACAACATCCAGAAGGA 84762 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||| | |||||||| ||||| Sbjct 84763 GTCTACTCTCCACCTGGTCCTTCGTCTTCGTGGTGG 84798 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || || || || |||||| | Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 84860 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 84919 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || ||||||||||| || || || | ||| ||||| ||| ||||| || Sbjct 84920 CAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 84978 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | ||| | ||||| || ||||| || Sbjct 84979 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTGCGTGGTGGCCA 85029 >seq25 Length=464062 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 387721 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 387780 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 387781 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 387840 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || |||||||||||||| |||||||||| || ||||| ||| ||||| || Sbjct 387841 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 387899 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 387900 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 387947 >seq11 Length=641957 Score = 125 bits (138), Expect = 8e-24 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 27405 AATGC--AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||| ||| || || ||||| || || |||||||| || || |||||||| ||||| Sbjct 26349 AATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCC 26408 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || || |||||||||||||||||||| || || Sbjct 26409 TCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAT 26468 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || ||||| ||||| |||||||||| || ||||| | ||||| Sbjct 26469 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTTTCTGACTAC 26528 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 26529 AACATCCAGAAGG 26541 >seq37 Length=345955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 31993 AAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACAT 32051 |||||| || || |||||| | ||||| || |||||| ||| || || || || Sbjct 176755 AAGCCTGGTCAACGAAAGGTGCTGTACGCTTGTTTCAAGAGAAACGTGGTCAAG-GATGA 176697 Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 |||||| | | ||||| | || ||||| | | | || ||||| ||||||||||| | Sbjct 176696 GAAGGTTGTGGAGCTGGCTGGTTACGTCTCTGGACTGACCGCCTACCACCACGGCGATGT 176637 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| ||| || ||||| | ||||| ||||||| || |||| || | || Sbjct 176636 CTCGCTGCAGCAGACGATTGTTGGATTGGCTCAAGACTTTGTGGGCTCAAACAATATCAA 176577 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAG 32231 | | |||||||| ||| | ||||| | || || || || || || |||| || Sbjct 176576 CGTCCTCGAGCCCAGTGGTAACTTTGGTTCTCGACTTGCTGGCGGTTCAGACTCTGCTAG 176517 Query 32232 CTCCCGTTACATCTTCACCCGTCT 32255 | ||||| ||||| || || || Sbjct 176516 TCCTCGTTATATCTTTACACGACT 176493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307683896720