Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=1198811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 268/407 (66%), Gaps = 24/407 (6%) Strand=Plus/Minus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||| ||||| | ||||| ||||| || || ||||||||| ||||| || Sbjct 1128508 ACGTAGAACTGGGCAAACATG---TGGCAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTT 1128452 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 30175 |||||||| |||| | ||| || | | ||| | ||| |||| | | || || Sbjct 1128451 GGGTTCCATGCGCTGAGGATCATTCTGCGGTCGTAGGGGCTGTTGCGCAGCTTGTGGATA 1128392 Query 30176 A---CGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30232 | |||| |||||| || || ||| | || | |||||||| || Sbjct 1128391 ATCTCGGC------CAGCTGGTCGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACA 1128338 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 || ||||| || || |||| ||||||||| ||||| || || || ||||| || | || Sbjct 1128337 TATTCTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCG 1128278 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | ||| || |||| |||| | || || | ||| |||||| ||||||||||||| Sbjct 1128277 CGGTGGGTGAGGCCCACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTG 1128218 Query 30353 ACCCC--CTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGC 30409 || || | || | ||| | | ||||| ||| ||||| || |||||| || ||| Sbjct 1128217 ACGCCGACGTCGCTGAGGG--CGGTGGAGGAGGTGTTGCCCTC-GATGAACCAGAGGAGC 1128161 Query 30410 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 || | | |||||| ||||| | |||||| ||||| ||||| Sbjct 1128160 TCGGCGATGACGGCGCGGAGGAAGACTCGCTTGGTGGTGAGCAGGGG 1128114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308513323052