Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq24 123 2e-23 >seq24 Length=472585 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || || || |||||||| | || Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||| ||||| ||||| || ||||| || || || || Sbjct 84860 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 84919 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || |||||||| || ||| | ||| |||||| Sbjct 84920 CAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAAC 84979 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||| ||| | || ||||| | ||| |||| |||||| Sbjct 84980 ATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTGCGTGGTGGC 85027 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || || |||||| | || ||||| || || || | ||||| | ||||| Sbjct 84584 GTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 84643 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || || || || ||||| || |||||| | || Sbjct 84644 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 84703 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || || || || | || ||| || ||| | |||||||||||| || |||||| Sbjct 84704 TTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAG 84763 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || |||| | ||| | || ||||| || Sbjct 84764 TCTACTCTCCACCTGGTCCTTCGTCTTCGTGGTGGTAT 84801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916328701120