Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=1198811 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| ||||| ||||| | |||||||| | || | |||||||||||||| || Sbjct 1128584 CTGCCAGCTATATCAGCGATCCTGCGACATGGGCCTCGGTATTCCGTTCAACATTGCAAG 1128643 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| ||||| || ||||| |||| || || | | || || |||| | | Sbjct 1128644 CTACGCACTGCTGACTCACATGCTCGCCCACGTTTGCGACCTTGTACC--GGGAACATTT 1128701 Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 | |||| |||| || || || ||||| | |||||||||| || || | ||| Sbjct 1128702 ACCCACGTCATGGGAGACGCACACGTCTACATTGACCACATCGATGCTCTTCGAACACAG 1128761 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 ||| | || ||||| ||||| ||||| |||| |||| Sbjct 1128762 CTGGAGCGCGAGCCGCGACCTTTCCCTGAGCTGGAAAT 1128799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||| |||| ||||| ||||| ||||| || | |||||| | || || |||||| Sbjct 1128799 ATTTCCAGCTCAGGGAAAGGTCGCGGCTCGCGCTCCAGCTGTGTTCGAAGAGCATCGATG 1128740 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACC 6611 |||| | ||||| || || || |||| |||| | | | |||| || || | Sbjct 1128739 TGGTCAATGTAGACGTGTGCGTCTCCCATGACGTGGGTAAATGTTCCC--GGTACAAGGT 1128682 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | || || |||| ||||| || ||||| ||||| || |||||||||||||| | | Sbjct 1128681 CGCAAACGTGGGCGAGCATGTGAGTCAGCAGTGCGTAGCTTGCAATGTTGAACGGAATAC 1128622 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 | | |||||||| | ||||| ||||| ||||||||| Sbjct 1128621 CGAGGCCCATGTCGCAGGATCGCTGATATAGCTGGCAG 1128584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260265150320