Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 3e-15 >seq24 Length=472585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || |||||||| || || || || || ||| || || || |||| || Sbjct 85008 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 84949 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || ||||| ||||||||||| | ||| | || ||| |||||| || Sbjct 84948 AGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC-TG 84890 Query 39196 ATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 | | | || |||| ||| | | | ||||| |||||||| || | ||||| | | Sbjct 84889 AATCTTTGACTTGA-CGTTGTCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGTCT 84831 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| || || |||||||| ||||| Sbjct 84830 TGCCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543605431853