Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq24 149 1e-30 seq25 145 2e-29 seq193 127 5e-24 seq11 118 3e-21 >seq24 Length=472585 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| |||| || ||||| ||||| Sbjct 84498 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 84439 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 84438 TCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 84379 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||| ||||| || | ||||| || | ||||| ||| Sbjct 84378 TGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTC 84319 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | |||||| Sbjct 84318 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 84287 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||| || || |||| ||||| ||| || || | || ||| Sbjct 85011 AGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCT 84952 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || ||||| || ||||| || |||||||| Sbjct 84951 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 84892 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || |||||||| || || | ||||| |||| ||||| ||| Sbjct 84891 TGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGTC 84832 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || Sbjct 84831 TTGCCGGTCAAAGTCTT 84815 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||||||||| || || || |||| ||||||||| || || Sbjct 84793 ACGAAGACGAAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGT 84734 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || || |||||||| || ||||| Sbjct 84733 GCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACC 84674 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || || ||||| || || | || || || | Sbjct 84673 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAG 84614 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 84613 AGTGATGGTCTTGCCAGT 84596 >seq25 Length=464062 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||||| || || |||| ||||| ||| || || Sbjct 387942 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 387883 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| | ||| || ||||| || ||||| || Sbjct 387882 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 387823 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 387822 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 387763 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 387762 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 387718 >seq193 Length=4809 Score = 127 bits (140), Expect = 5e-24 Identities = 205/289 (71%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || |||||||||||||||| ||||| || ||||| ||| || ||||| | | Sbjct 1417 ACTTTATATTTAATATTTGCCTTATTTTCAGG-ATTATTAGGAACAGCCTTTTCAGTATT 1475 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 ||||| |||||| |||| || || ||| |||| || | || |||| |||| | | Sbjct 1476 AATAAGATTAGAACTTAG-TGGACCTGGTGTTCAA---TTTATTGCCAATAACCAATTAT 1531 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| |||||| || || || || | | ||||| |||||| | |||||||| | Sbjct 1532 ATAACAGTATTATAACAGCTCACGCTATCTTAATGATATTCTTTATGGTTATGCCAGCCT 1591 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || || |||| || | ||||||||||| || | ||||||||||| | Sbjct 1592 TAATAGGAGGATTTGGTAATTTTTTAATGCCTTTAATGATAGGAGGACCTGATATGGCAT 1651 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | || || | || ||||| ||||| |||||| |||| ||| ||||| Sbjct 1652 TCCCTAGATTAAATAATATCAGTTTCTGATTATTACCACCTAGTTTATT 1700 >seq11 Length=641957 Score = 118 bits (130), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | | |||| ||||| || |||||||| ||||||||||| Sbjct 26539 TTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 26480 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || || || || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 26479 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 26420 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 26419 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA- 26361 Query 225706 ACTT---GCATTT 225715 |||| |||||| Sbjct 26360 ACTTTTCGCATTT 26348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525378584414