Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 >seq3 Length=984773 Score = 120 bits (132), Expect = 3e-22 Identities = 334/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 || || ||||| || || || | || ||||| | ||||||||| || ||||| || || Sbjct 415071 ATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATG 415012 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 | |||||| | || ||||| || || || ||||| ||||| || || | || Sbjct 415011 GAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGG 414952 Query 4704 CCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACG 4763 | || || | | ||||| | |||||| || | ||||||| || || || || | Sbjct 414951 GCAAAGGAAGAGTCCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATG 414892 Query 4764 CACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAA 4823 || ||||| || | || ||||| || | | || | | || | | || Sbjct 414891 CAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAG 414832 Query 4824 GTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCG 4883 ||||| || || || || | || || || || || || || ||||| || ||| Sbjct 414831 GTGTCGATGAGCAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCG 414772 Query 4884 TAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCG 4943 || ||||||| ||| || | | ||||| ||| | || | || || | ||| ||| Sbjct 414771 TAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCG 414712 Query 4944 TTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCG 5003 || || || ||||| ||| ||||| || |||| | ||||| || ||||||| ||| Sbjct 414711 TTGACAATGCCGTCGGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCG 414652 Query 5004 TCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACA 5060 ||| || || || ||||||| | ||| ||| || | | ||||| || || | Sbjct 414651 TCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCG 414592 Query 5061 GTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||||| || || || || || ||||||||||| Sbjct 414591 GTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 414560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047617021873