Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 178 2e-39 >seq9 Length=716796 Score = 178 bits (196), Expect = 2e-39 Identities = 571/878 (65%), Gaps = 10/878 (1%) Strand=Plus/Minus Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818 ||| || ||||| || | ||||||||||| ||||| | ||||| ||||| || || Sbjct 53647 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAA 53588 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 77877 || | || || ||| |||| | || | ||||| | ||| | | ||| |||| | Sbjct 53587 GGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACA-GCTTCTGAGCTCGGA 53529 Query 77878 TCATAGATTTGTATCGCCTCTCT--CTT-TCATATTGAGTATATAGCCGTTCAAATTCAT 77934 | || ||| | | | || ||| ||||| | ||| ||| || ||||| | Sbjct 53528 T---AGTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATTCTT 53472 Query 77935 CTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT-CACCA 77993 | || | ||| | | ||||||||||| || ||||||||||| | ||||| || Sbjct 53471 CGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGTCCAGTCCAAGT 53412 Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 78053 |||| || ||| || ||||| || |||||||| ||||| ||||| | || || || ||| Sbjct 53411 TCTT-CTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGG 53353 Query 78054 GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113 | | ||||| || || ||||| || || || ||||| | || ||||| Sbjct 53352 GCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCG 53293 Query 78114 TGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATA 78173 ||||| || || || || || || | ||||||| || || || || ||||| || | Sbjct 53292 TGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACG 53233 Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTT 78233 |||||||| ||||| || | |||| | ||| || || |||||||| || || || || Sbjct 53232 TATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTG 53173 Query 78234 GTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCT 78293 || || | ||| ||| || | || || ||| | | | || || || || Sbjct 53172 GTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCACCA 53113 Query 78294 GCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCA 78353 |||||||| || || | || || ||||| || |||||||||||||| || ||||| Sbjct 53112 GCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCG 53053 Query 78354 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAT 78413 ||| |||||| | || || || |||| ||| || || || || || || Sbjct 53052 TCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTACCAGCGTTGAAG 52993 Query 78414 AATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCT 78473 | || || || ||||| ||||| | || || | || | |||||| |||| | Sbjct 52992 AGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 52933 Query 78474 GATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTT 78533 || |||| | || || || || |||||||| | ||| ||||| |||| Sbjct 52932 CGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGC 52873 Query 78534 TCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 78593 ||||| |||| || | ||||| | |||||| |||| || || || || || Sbjct 52872 TCAACAATCTTGCCATCAAGTTTCAGGAGATATGATCGCTCCAGTGTCTTGAAGCCGAAG 52813 Query 78594 TAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGA 78631 || | ||| ||||||| ||||| | ||| |||| Sbjct 52812 TATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCAGA 52775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665491639840