Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 161 1e-34 >seq9 Length=716796 Score = 161 bits (178), Expect = 1e-34 Identities = 564/872 (65%), Gaps = 10/872 (1%) Strand=Plus/Minus Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 ||| ||||| || || | ||||||||||| ||| || | ||||| ||||| | || Sbjct 53647 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAA 53588 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 76472 || | ||||| ||| |||| | || | ||||| | ||| | | ||| |||| | Sbjct 53587 GGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACA-GCTTCTGAGCTCGGA 53529 Query 76473 TTATAGATTTGTATCGCTTCTCT--CTT-TCATATTGTGTATATAACCGTTCAAATTCAT 76529 | || ||| | ||| || ||| ||||| | ||| | | || ||||| | Sbjct 53528 T---AGTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATTCTT 53472 Query 76530 CTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC-ACCA 76588 | || | ||| | | ||||| ||||| || || |||||||| | ||| || | Sbjct 53471 CGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGTCCAGTCCAAGT 53412 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 ||||| | ||| || ||||| || |||||||| ||||| ||||| | || || || ||| Sbjct 53411 TCTTC-TCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGG 53353 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | | ||||| || || ||||| || || |||||||| | || ||||| Sbjct 53352 GCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCG 53293 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||| || || || || || || | | || || || || || || ||||| || | Sbjct 53292 TGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACG 53233 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 |||||||||||||| || | |||| | ||| || || || ||||| || ||||| || Sbjct 53232 TATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTG 53173 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 || || | ||| ||| || ||||| ||| | ||||| || || || Sbjct 53172 GTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCACCA 53113 Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 ||||| || || || | ||||| ||||| ||||| ||||| ||||| || || || Sbjct 53112 GCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCG 53053 Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008 ||| |||||| | || || || |||| ||| || || || || || || Sbjct 53052 TCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTACCAGCGTTGAAG 52993 Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068 | || || || ||||| || || | || || | || | |||||| |||| || Sbjct 52992 AGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 52933 Query 77069 GCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGT 77128 || || | | || || ||||| |||||||| | ||| ||||| ||||| Sbjct 52932 CGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGC 52873 Query 77129 TCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 77188 || ||| |||| || | ||||| | |||||| |||| || || || || || Sbjct 52872 TCAACAATCTTGCCATCAAGTTTCAGGAGATATGATCGCTCCAGTGTCTTGAAGCCGAAG 52813 Query 77189 TAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || | ||| ||||||| ||||| | ||| Sbjct 52812 TATTGGTAGTTGAAGTCTCGGTCGTAGACAAT 52781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931004649920