Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq24 125 2e-23 seq25 100 7e-16 seq11 84.2 5e-11 >seq24 Length=472585 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || |||||||| || ||||||||||| |||| | ||||| Sbjct 84505 GAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCG 84446 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | ||||||||| | | || || || Sbjct 84445 GCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTC 84386 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | || | |||| ||| ||| || || ||||| Sbjct 84385 CTTGTCCTGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGT 84326 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||||| ||||| Sbjct 84325 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 84287 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||||||||| || ||||||||||||||| | || | || || Sbjct 84783 AGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 84724 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | ||| || ||||| || Sbjct 84723 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 84664 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | | || || ||| || || ||||| || || Sbjct 84663 TGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTC 84604 Query 152073 TTGCCCGTGAGAGTCTTCACGA-AGACCTGCATTTTA 152108 ||||| ||||| ||||| |||| || ||||| ||| Sbjct 84603 TTGCCAGTGAGGGTCTTGACGACTGAAATGCATATTA 84567 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||| || ||||||||||| ||| | || | || || Sbjct 85012 GAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 84953 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || ||||||||||| | ||||||||| | | || || ||||| || Sbjct 84952 TTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 84893 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| ||| ||||| | || | | | || || ||| ||||| || || || || Sbjct 84892 CTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGT 84833 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 84832 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 >seq25 Length=464062 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| ||| | || | ||||| Sbjct 387932 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 387873 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | ||||||||||| | || || ||||| || Sbjct 387872 TCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 387813 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 387812 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 387753 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| ||||| | |||||| || || Sbjct 387752 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 387715 >seq11 Length=641957 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | |||| ||||| || || || || |||||||| Sbjct 26539 TTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 26480 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | |||||| |||| | ||||| ||||| || || || || |||||| | || Sbjct 26479 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 26420 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || ||||| || || || |||||||| || ||||||||||| Sbjct 26419 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 26361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815167551651