Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3 219 5e-52 >seq3 Length=3158035 Score = 219 bits (242), Expect = 5e-52 Identities = 520/795 (65%), Gaps = 68/795 (9%) Strand=Plus/Plus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 |||||| | ||| | |||||| || | | |||||||| |||||||| | | ||||||| Sbjct 1641236 TTAGACGGACATGTTCATGGGAATTGACTTGTGGGGGTCGTAGCCCTTGACCACAAAGTC 1641295 Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCTGGGAA 145651 ||| || | || |||| ||| | || ||| ||| | ||| ||| || | Sbjct 1641296 CTCGACCTTCCAGCCATCGATG-CTGCCGCCCTTCTCCCGCGTAATCTCCAGCTCAGGGA 1641354 Query 145652 AGGGCCGGGGGCTCCTGGT-CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | ||||| || ||| | | ||| || || || | || | ||||| || ||||||| Sbjct 1641355 ACGGCCGAGG-CTCACGCTTCAGTTGTGTCTCGAGAGCGTCGATGTGGTCGATGTAGACG 1641413 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770 || ||||| |||| ||||||| ||| | |||||| | ||| | | ||| |||| | Sbjct 1641414 TGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGGTCGCACACGTGAGCGAGC 1641473 Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830 |||| || ||||| | |||||||| ||||||||||| | || || |||||||| | Sbjct 1641474 ATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGACCCATGTCGCAG 1641533 Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAG---------------------------------- 145856 || |||||||| ||||||||| ||| Sbjct 1641534 GACCGCTGGTATAGCTGGCAGTGGAGGTGGCCCTTTGGCTTGTTCTCTTCCGTGGGTTCT 1641593 Query 145857 ----------CTCCCCGCCCGCC-------------ACGTAGAACTGGCACAGGAGGTGG 145893 ||||||| |||| |||||||||||| | | ||| Sbjct 1641594 GCGGCTCCGACTCCCCGTCCGCGTCCGGGGTACGAAACGTAGAACTGGGCAAACATGTGA 1641653 Query 145894 CAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTC 145953 |||||||||||||||||| | ||| ||||||||| ||| |||||| | ||| Sbjct 1641654 CAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCATGCGCTGAGGATCATTCTC 1641713 Query 145954 CTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGC 146013 | | | ||||| | | || || | || ||||||||| ||||||| Sbjct 1641714 CGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATGATCTCGGCGAGCTGGTCGACGCCCTTG 1641773 Query 146014 CCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCG 146073 || || || | ||| | |||||||||| |||| || ||||||| |||||| || ||| Sbjct 1641774 CCGGCATAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCACTGAAAGCCG 1641833 Query 146074 TAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCC 146133 |||||||| |||||||| ||| ||| | ||| ||| ||| | | | ||||||| || Sbjct 1641834 TAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCGAGGAACTCG 1641893 Query 146134 CGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTCCG 146191 ||||| || ||| ||||||||||||||||||| | ||| ||| | | |||| || Sbjct 1641894 CGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGG--CGAGGGAGGACG 1641951 Query 146192 TGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGG 146251 || ||| |||||||||||| ||||| ||| ||| | | |||||||| || | Sbjct 1641952 TGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGACGGCACGGAGGAAGACCCGTTTTG 1642011 Query 146252 TGGTCAGCAGGGGGA 146266 | || ||||| |||| Sbjct 1642012 TTGTGAGCAGAGGGA 1642026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076335314520