Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7 122 7e-23 seq3 105 5e-18 >seq7 Length=2414983 Score = 122 bits (134), Expect = 7e-23 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| |||||||||||||| |||||||||||| ||| |||| |||| ||| Sbjct 116527 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 116468 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || ||||| ||||| ||||| ||||| | ||||||||||||| Sbjct 116467 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 116411 Score = 116 bits (128), Expect = 3e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184 |||| ||| || ||| ||||||||| |||||||||||| ||| | ||| ||| ||| Sbjct 116142 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 116083 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || ||||| |||| ||||| ||||| ||||| | |||||||||||| Sbjct 116082 ---AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 116026 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | || | ||||||||| | ||| || ||| Sbjct 116025 TGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTC 115966 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || || ||||| || |||||||||||| || Sbjct 115965 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATGGTG 115930 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || | || ||| Sbjct 819888 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 819829 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | |||||||||||| Sbjct 819828 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 819769 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 819768 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 819709 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || || || ||||| |||||| Sbjct 819708 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 819673 >seq3 Length=3158035 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 45139 CGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCC 45198 |||||||| |||||| |||||||||||| ||| | || |||| ||||| || || || Sbjct 1903390 CGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACC 1903449 Query 45199 GGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTT 45258 ||||| || || ||||| ||||| || || | ||||| |||||| ||| || ||| Sbjct 1903450 AGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTGGACTT 1903509 Query 45259 AACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGT 45318 || | | | |||| | ||||||| | |||||| |||||||| || ||||| Sbjct 1903510 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAGT 1903569 Query 45319 CTTCACAAAGATTTGCAT 45336 ||| || || || || || Sbjct 1903570 CTTGACGAAAATCTGTAT 1903587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074896656323