Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 342 5e-89 seq8 219 4e-52 seq7 100 3e-16 seq3 100 3e-16 >seq4 Length=2906552 Score = 342 bits (378), Expect = 5e-89 Identities = 1135/1746 (65%), Gaps = 38/1746 (2%) Strand=Plus/Minus Query 22247 GACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCAT 22305 ||||| |||||| || || || || ||||| || ||||| | | |||| | ||| Sbjct 974701 GACTGGGACTGATCAATGAAAGCACCACGATCAGCTGCCATCTGGA-CAATTTGGCGCTG 974643 Query 22306 CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCT 22365 || || ||||| ||||||||||| || | |||| ||| || || ||| | Sbjct 974642 AGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATGTTGGGGATGTT 974583 Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| ||||| | ||||| || || || | |||| ||| | ||| | Sbjct 974582 CTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGT 974523 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | || || || |||| || |||| || ||||| |||||||||| | ||| || Sbjct 974522 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACTTGGAACTCGCCGGCAAGGACACG 974463 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 || ||||| |||||||| ||| | || ||||| | || ||||| ||||| ||||| | Sbjct 974462 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 974403 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAA 22603 || || || ||||| || || | || | ||| | | ||||||| |||| Sbjct 974402 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA- 974344 Query 22604 ATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662 | | ||| |||||| ||| |||||||| || || ||| | |||| ||||||| Sbjct 974343 --TCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGCTTGACAT---CCCACAT 974289 Query 22663 ATCGTATTGCAACACGCCG-CGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACCA 22720 ||| |||| | | ||| || | || || | | |||| | | | |||||| ||||| Sbjct 974288 GTCGAATTGGAGGATGCCCTCGGAT-GCAGGTGATCCCTT-GAATGATTCGTAGGGACCC 974231 Query 22721 TATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATT 22780 | | | ||| | || ||||| | || | | || || ||||| ||||| Sbjct 974230 TCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATC 974171 Query 22781 TTCTTGTTCAATT--CG-GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAAC 22837 | |||||||| | || || ||| || || | | ||||| |||| | ||| Sbjct 974170 TGCTTGTTCAGCTGACGAGCCTCGG-GAGACT--CAAAGGGCATGCGCAGGGCAAGGAAA 974114 Query 22838 GCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT 22897 ||||| || | |||||| || || | ||| || ||||||| || || || || Sbjct 974113 GCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTG----CTGTT 974058 Query 22898 GC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || ||| | | ||| || ||| ||| || | |||| | ||| | | || Sbjct 974057 GCGGGCCTCCTGGACAGGGTAGTGATTGACATCAATGATCTTGTTGAGGTTGCGGACAAC 973998 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAA 23009 | || || | | |||||| || ||| || ||||| | ||| Sbjct 973997 CACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCG-TTGTAATCGACAT 973939 Query 23010 ACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACT 23069 | || ||| | ||||| | ||||| || || ||||| ||| | ||||| Sbjct 973938 AAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACT 973879 Query 23070 CTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129 | | ||| ||||| || || ||| | || || |||| || |||||||||| | Sbjct 973878 CGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCT 973819 Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189 | || ||||| | |||||||||||||||| | || | || ||||| ||| | || | Sbjct 973818 TGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCTTCCA 973759 Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTC 23247 ||| | ||||| |||| ||| | | |||| || || | ||| |||| || Sbjct 973758 GGATGGAATACCACAGCTTCTGGGCGCGGATG-GTCGTGCGACCACGTCCCTCCTTC-TC 973701 Query 23248 GTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTG 23307 ||||| | ||||| || || ||||| | || || ||||| || ||||| || ||| Sbjct 973700 ATACTTCTCATACAAAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTC 973641 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367 | || ||||| || |||| ||| |||||||| || |||| || ||||| || Sbjct 973640 GTTGGGGCACATCAGCGTCCAGTCCAAGTTCTTTTCAACACGCTTCATGAAGAGATCGGG 973581 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 ||||| ||||| ||||| || |||||||| ||||| || |||||| |||||| Sbjct 973580 AATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCG 973521 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | ||| | || || || ||||| || ||||| ||||||||||| | |||||| || || Sbjct 973520 GAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC 973461 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 || | ||| || || ||||||||||| || | ||| ||||||||| |||||| ||||| Sbjct 973460 AGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCAT 973401 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || | | |||||| || | ||| ||| || | || || | || || | Sbjct 973400 GGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGAT 973341 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 | ||| |||| || || || || || || || || ||||| || ||| ||||| Sbjct 973340 GCGGTGGACGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAG 973281 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||||||||| ||||| ||||| || || || | |||||||||| || || |||| Sbjct 973280 AGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAG 973221 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || || | || ||| | || |||||| || ||| ||| || || ||| | | Sbjct 973220 CTGGGCCTGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCT 973161 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| || ||||| || || | | | |||||||| ||||| || || | | Sbjct 973160 GGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATGCCAACAGA 973101 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 || ||||| ||||||| || || | ||| || | ||| | || || | || || Sbjct 973100 CACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTA 973041 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967 ||| |||| || || || || || || || | ||||| ||||| ||||||| || || Sbjct 973040 TGACCGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 972981 Query 23968 GGCCGA 23973 || || Sbjct 972980 AGCGGA 972975 >seq8 Length=2103943 Score = 219 bits (242), Expect = 4e-52 Identities = 495/732 (68%), Gaps = 23/732 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| |||||| | || ||| Sbjct 373459 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAGATTGATCTG 373518 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683 || ||||||||| ||| ||| | || | || || ||| ||||| | || || Sbjct 373519 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 373575 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || ||||| || ||||| ||||| |||||||| ||||||| Sbjct 373576 TCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 373635 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | ||| || || || | | ||||| ||||||| ||||| || || | Sbjct 373636 CGCTTTAGTGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 373695 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || ||||||||||| ||| | ||||| ||| Sbjct 373696 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGATACCTACATCAAGGAGAAC 373755 Query 57864 GACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAA 57919 | || || || || |||||||| || || || || || || |||| ||||| Sbjct 373756 AGCCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGC-AAGAA 373811 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 ||| || ||| | ||||| ||||| | | | | | || ||| || | || | Sbjct 373812 GGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGT 373871 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || |||||||| || ||||| ||||| || |||||| | || || ||| | Sbjct 373872 TGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCT 373931 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || ||||| || ||||| ||| ||||||| | || || || ||||| Sbjct 373932 CAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGA 373991 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGAC-G 58157 |||||| || || || ||||| ||||| || |||||||| |||| || | || | | Sbjct 373992 GGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCTCAC---CTCAAGAACCGCGCCAG 374048 Query 58158 C-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | ||| ||| ||||| |||||||| || ||| || || | ||||| | || Sbjct 374049 CAAGGAAGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGAC 374108 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || || || ||| | || || |||||| | ||||| |||||||||| Sbjct 374109 CGAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 374168 Query 58277 GTTTGTTGCCGA 58288 ||| || ||||| Sbjct 374169 GTTCGTCGCCGA 374180 >seq7 Length=2414983 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 115933 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 115992 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 115993 CGATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 116052 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| || | || || ||| || ||| || || Sbjct 116053 GCAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 116112 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 116113 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 116145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 819677 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 819736 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 819737 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 819796 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| |||| || || | ||| || Sbjct 819797 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 819856 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 819857 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 819907 >seq3 Length=3158035 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 || || |||||||| |||||||| || ||||| || || ||| | | || ||| | ||| Sbjct 1903587 ATACAGATTTTCGTCAAGACTCTCACCGGCAAGACAATTACCCTTAAGGTGGAATCTTCC 1903528 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| || ||| | || || |||||| Sbjct 1903527 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAG 1903468 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| |||| |||||||| || ||| |||||||| | || ||||||| || ||| Sbjct 1903467 CAGCGCTTAATCTTCGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTACAAC 1903408 Query 31373 ATTCAAAA 31380 || || || Sbjct 1903407 ATCCAGAA 1903400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766048958960