Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq8 170 4e-37 seq4 114 3e-20 >seq8 Length=2103943 Score = 170 bits (188), Expect = 4e-37 Identities = 304/440 (69%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || ||||| || |||||||| || ||||| || || ||||| |||||| Sbjct 373870 GTTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 373929 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | ||| Sbjct 373930 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 373989 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || ||||||||| ||| ||||| | | || ||| Sbjct 373990 GAGGGTCTGCACACCGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGCG 374044 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| ||| ||| | ||| || |||| || || ||||||||||| ||||| || Sbjct 374045 CCAGCAAG-GAAGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTC 374103 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || ||| | | || ||||||| ||| |||||| |||||| Sbjct 374104 TTGACCGAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTAC 374163 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| || || || ||| || | || | | || || ||| ||| || | Sbjct 374164 ATTGAGTTCGTCGCCGATCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCT 374223 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 ||||||||||| |||||||| || ||||| |||| ||||||||||| || || Sbjct 374224 GCCAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAG 374283 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 374284 AAGCGCGTCGCCGACTACCA 374303 >seq4 Length=2906552 Score = 114 bits (126), Expect = 3e-20 Identities = 178/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| ||||||| || || || ||| ||||| || || |||||||||||| Sbjct 973318 CCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCGTAGATACCCTCAATG 973259 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910 ||||| || | | | | | | |||||| ||||| || |||| || | || || Sbjct 973258 CTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGG-GTACCTGC 973200 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 || ||||| |||||||| |||||||| || | | || |||||||| | ||||| || Sbjct 973199 GTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTC 973140 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 | |||| | ||||| ||| ||||| |||| ||| ||||||||||||| ||| Sbjct 973139 CAGGACACGCTCAATGTCATCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTG 973080 Query 95031 AGGGCGCTCAAC 95042 || |||||||| Sbjct 973079 TGGCCGCTCAAC 973068 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 |||||| ||||| ||||| |||| || || ||||||| | ||| | |||||||||||| Sbjct 973703 CTCATACTTCTCATACAAAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 973644 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAG-CCTT---CACTCTCTCCATGAAGA 94522 |||| |||||||||||| | ||| ||| || ||| || | || |||||||| Sbjct 973643 TTCGTTGGGGCACATCAGCGTCCA----GTCCAAGTTCTTTTCAACACGCTTCATGAAGA 973588 Query 94523 GATCAGATACCCAGATAGCTGGGAA 94547 |||| | | ||||| ||| |||| Sbjct 973587 GATCGGGAATCCAGAGAGCAAGGAA 973563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583201220165