Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq8 170 4e-37
seq4 114 3e-20
>seq8
Length=2103943
Score = 170 bits (188), Expect = 4e-37
Identities = 304/440 (69%), Gaps = 9/440 (2%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| || ||||| || |||||||| || ||||| || || ||||| ||||||
Sbjct 373870 GTTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 373929
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | |||
Sbjct 373930 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 373989
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094
|| ||||| || ||||||||| ||| ||||| | | || |||
Sbjct 373990 GAGGGTCTGCACACCGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGCG 374044
Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
||| |||| ||| ||| | ||| || |||| || || ||||||||||| ||||| ||
Sbjct 374045 CCAGCAAG-GAAGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTC 374103
Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214
| || | | || ||| | | || ||||||| ||| |||||| ||||||
Sbjct 374104 TTGACCGAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTAC 374163
Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274
||||| || || || ||| || | || | | || || ||| ||| || |
Sbjct 374164 ATTGAGTTCGTCGCCGATCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCT 374223
Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334
||||||||||| |||||||| || ||||| |||| ||||||||||| || ||
Sbjct 374224 GCCAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAG 374283
Query 102335 AAGAGAGTCGCCGAGTATCA 102354
||| | |||||||| || ||
Sbjct 374284 AAGCGCGTCGCCGACTACCA 374303
>seq4
Length=2906552
Score = 114 bits (126), Expect = 3e-20
Identities = 178/252 (71%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
|| ||||| ||||||| || || || ||| ||||| || || ||||||||||||
Sbjct 973318 CCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCGTAGATACCCTCAATG 973259
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910
||||| || | | | | | | |||||| ||||| || |||| || | || ||
Sbjct 973258 CTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGG-GTACCTGC 973200
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
|| ||||| |||||||| |||||||| || | | || |||||||| | ||||| ||
Sbjct 973199 GTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTC 973140
Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030
| |||| | ||||| ||| ||||| |||| ||| ||||||||||||| |||
Sbjct 973139 CAGGACACGCTCAATGTCATCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTG 973080
Query 95031 AGGGCGCTCAAC 95042
|| ||||||||
Sbjct 973079 TGGCCGCTCAAC 973068
Score = 84.2 bits (92), Expect = 4e-11
Identities = 107/145 (74%), Gaps = 8/145 (6%)
Strand=Plus/Minus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
|||||| ||||| ||||| |||| || || ||||||| | ||| | ||||||||||||
Sbjct 973703 CTCATACTTCTCATACAAAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 973644
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAG-CCTT---CACTCTCTCCATGAAGA 94522
|||| |||||||||||| | ||| ||| || ||| || | || ||||||||
Sbjct 973643 TTCGTTGGGGCACATCAGCGTCCA----GTCCAAGTTCTTTTCAACACGCTTCATGAAGA 973588
Query 94523 GATCAGATACCCAGATAGCTGGGAA 94547
|||| | | ||||| ||| ||||
Sbjct 973587 GATCGGGAATCCAGAGAGCAAGGAA 973563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583201220165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |