Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8 149 8e-31 seq4 123 3e-23 >seq8 Length=2103943 Score = 149 bits (164), Expect = 8e-31 Identities = 370/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||| | | || | ||||||||||| || || Sbjct 374015 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 373956 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || || ||||| || ||||| || ||||| ||||| | || ||||| Sbjct 373955 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 373896 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGT 36334 || || || || || |||||||||| || | || || || | |||| || Sbjct 373895 ATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 373836 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||||| ||||| ||||||||||| | ||||| || ||||| || || || Sbjct 373835 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 373776 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 ||||| ||| | | | | || || | || ||||| || | || || | Sbjct 373775 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTC 373716 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || || ||||| || || || || || |||||||| |||| |||||||| ||| Sbjct 373715 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 373656 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || || || || ||| || || | | || || || || || || ||| ||| ||| Sbjct 373655 TGGACCTCGCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 373596 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTA---GTTTATTCCA 36630 || || |||| | || || || || || |||| | || | | | || ||||| Sbjct 373595 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 373537 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 373536 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTT 373477 Query 36691 TTTATACATATTCCAGAT 36708 || ||||| | |||||| Sbjct 373476 CTTGTACATTTGCCAGAT 373459 >seq4 Length=2906552 Score = 123 bits (136), Expect = 3e-23 Identities = 451/699 (65%), Gaps = 14/699 (2%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| ||||| | || ||||||| || ||| || || | | || || ||||| Sbjct 973651 CCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTCCAAGTTCTTTTCAACACGCTTCATG 973592 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 |||||||| |||||||| ||||| | || || || | || | || || || || Sbjct 973591 AAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGCCG 973532 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| ||||| |||||| | | | || ||||| || || | ||| ||| Sbjct 973531 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 973472 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 973471 GCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 973412 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| | ||| ||||||||||| || || ||||| ||||| || | || || || Sbjct 973411 ACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 973352 Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | ||||| || | || | || || || || || ||||| || || || | | Sbjct 973351 GTGGCACGGATGCGGTGGACGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCATGG 973294 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | ||| || | || || ||||| ||||| || ||||| ||| |||||| | | | Sbjct 973293 CACATGTCTTCAGAGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGA 973234 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 | || |||| ||| | || || || || || | ||| || || || || | Sbjct 973233 AGCATGAGGACAGCTGGGCCTGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATGGG 973174 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTC----AATAGCTGAGTCT-ATATCCCA 66544 | || | || || | || ||||| ||||| | ||| | | | || |||| Sbjct 973173 TGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCC- 973115 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 |||| || || | || ||||| | ||||||||| || | ||||| |||||| Sbjct 973114 CAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCC 973059 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 66664 | | |||| | ||| || ||||||||| || || || || || | ||| || Sbjct 973058 ATCAAGCTTCAGAAGGTATGACCGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAA 972999 Query 66665 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 |||||| ||||| | |||| | |||| ||| | ||||| Sbjct 972998 GTCTCGATCGTAGACAATAGCGGAGTCGAGCTCCTCCTT 972960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172281688920