Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 172 8e-38 seq4 145 1e-29 >seq8 Length=2103943 Score = 172 bits (190), Expect = 8e-38 Identities = 374/557 (67%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | | || || ||||||||||| || || Sbjct 374015 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 373956 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || ||||| || ||||| ||||| | || |||||| Sbjct 373955 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 373896 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGT 50136 || || || || |||||||||||||| || | || || || | |||| || Sbjct 373895 ATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 373836 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 373835 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 373776 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| | | | | || || | || |||||||| | || || | Sbjct 373775 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTC 373716 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 373715 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 373656 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || || ||| || || | | || || || || || || ||| ||| ||| Sbjct 373655 TGGACCTCGCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 373596 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAA 50433 || || |||| | || || || | || |||| | | | | || ||||| Sbjct 373595 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 373536 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 373535 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTC 373476 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 373475 TTGTACATTTGCCAGAT 373459 >seq4 Length=2906552 Score = 145 bits (160), Expect = 1e-29 Identities = 458/701 (65%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCA 79948 ||||| ||||||| || ||||||| || ||| || || || ||| || || |||| Sbjct 973651 CCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTC--CAAGTTCTTTTCAACACGCTTCA 973594 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 | |||||||| |||||||| ||||| | || | || | || | ||| || || | Sbjct 973593 TGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGC 973534 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | ||||| ||||| |||||| | | | || | ||||| || || | ||| | Sbjct 973533 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGA 973474 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 |||| | | || || || ||||| || |||||||| | ||||| || ||||| || Sbjct 973473 TGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGA 973414 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | |||| | ||| ||||||||||| || || ||||| ||||| || | || || | Sbjct 973413 ACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGC 973354 Query 80189 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 | ||||||| || | || | || || || || || ||||| || || || | Sbjct 973353 CGGTGGCACGGATGCGGTGGACGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCAT 973296 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || ||| || | || || ||||| ||||| |||||||| || |||||| | | Sbjct 973295 GGCACATGTCTTCAGAGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAA 973236 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || || |||| ||| | || || || || || | ||| || || || || Sbjct 973235 GAAGCATGAGGACAGCTGGGCCTGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATG 973176 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC----AATAGCTGATTCT-ATATCC 80421 || || | || |||| || ||||| ||||| | ||| | | | || ||| Sbjct 973175 GGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCC 973116 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 | |||| || || | || ||||| | ||||||||| || | ||||| |||||| Sbjct 973115 C-CAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTG 973061 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 || | |||| | ||| || ||||||||| || || || || || | ||| Sbjct 973060 CCATCAAGCTTCAGAAGGTATGACCGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTG 973001 Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 |||||||| ||||| | |||| | |||| ||| | ||||| Sbjct 973000 AAGTCTCGATCGTAGACAATAGCGGAGTCGAGCTCCTCCTT 972960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268234363320