Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8 149 8e-31 seq4 131 2e-25 >seq8 Length=2103943 Score = 149 bits (164), Expect = 8e-31 Identities = 369/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| |||||||||||| || | | || | ||||||||||| || || Sbjct 374015 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 373956 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || ||||| || ||||| || || || ||||| | || |||||| Sbjct 373955 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 373896 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGT 42241 || || || || || |||||||||| || | || || || | |||| || Sbjct 373895 ATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 373836 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 373835 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 373776 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| ||| | | | | || || | || |||||||| | || || | Sbjct 373775 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTC 373716 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||||||| | | Sbjct 373715 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 373656 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || || ||| || || | | || ||||| || || || ||| ||| ||| Sbjct 373655 TGGACCTCGCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 373596 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCA 42537 || || |||| | || || || || || |||| | ||| | || ||||| Sbjct 373595 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCA 373537 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | ||| || || | ||| | ||||| | ||||| || || || || ||||| Sbjct 373536 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTT 373477 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 373476 CTTGTACATTTGCCAGAT 373459 >seq4 Length=2906552 Score = 131 bits (144), Expect = 2e-25 Identities = 455/701 (65%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 ||||| ||||| || || ||||||| | ||| || || || ||| || || |||| Sbjct 973651 CCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTC--CAAGTTCTTTTCAACACGCTTCA 973594 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | |||||||| |||||||| ||||| | || | || | || | ||| || || | Sbjct 973593 TGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGC 973534 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||||| ||||| |||||| | | | || | ||||| || || | ||| | Sbjct 973533 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGA 973474 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | || || || ||||| || |||||||| | ||||| || ||||| || Sbjct 973473 TGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGA 973414 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | |||| | ||| ||||||||||| || || | ||| ||||| || | || || | Sbjct 973413 ACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGC 973354 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||||||| || || || | || || || || || ||||| || || || | Sbjct 973353 CGGTGGCACGGATGCGGTGGACGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCAT 973296 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || ||| || | || || ||||| ||||| || ||||| ||| |||||| | | Sbjct 973295 GGCACATGTCTTCAGAGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAA 973236 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || |||| ||| | || || || || || | ||| || || || || Sbjct 973235 GAAGCATGAGGACAGCTGGGCCTGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATG 973176 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC----AATAGCTGATTCT-ATATCC 72504 || || | || |||| || ||||| ||||| | ||| | | | || ||| Sbjct 973175 GGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCC 973116 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | |||| || || | || ||||| | ||| ||||| || | ||||| |||||| Sbjct 973115 C-CAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTG 973061 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624 || | |||| | ||| || ||||||||| || || || || || | ||| Sbjct 973060 CCATCAAGCTTCAGAAGGTATGACCGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTG 973001 Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 |||||||| ||||| | |||| | || | ||| | ||||| Sbjct 973000 AAGTCTCGATCGTAGACAATAGCGGAGTCGAGCTCCTCCTT 972960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138671477880