Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 277 3e-69 seq4 150 3e-31 >seq8 Length=2103943 Score = 277 bits (306), Expect = 3e-69 Identities = 577/848 (68%), Gaps = 31/848 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| ||||||| || ||||| | ||||||| | |||||| Sbjct 373459 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAGATTGATCTG 373518 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| |||| | || || Sbjct 373519 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 373574 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| | Sbjct 373575 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 373634 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || || | ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 373635 GCGCTTTAGTGGCGAGGTCCAGATCCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCA 373693 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT--TCGCGA 125311 |||| |||||| | ||||| || | ||||| || || || | ||||| | || Sbjct 373694 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGATACCTACATCAAGGAGA 373753 Query 125312 TCCG-CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | | || || | || ||||| ||||| || || || | || | || || || | Sbjct 373754 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 373810 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || ||||||| | ||| | || ||||| | ||| | | |||| Sbjct 373811 AGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 373870 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 373871 TTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 373930 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| |||| Sbjct 373931 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 373990 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| ||||||||| || ||| ||| | | | | || | Sbjct 373991 AGGGTCTGCACACCGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 374041 Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 | ||||| | ||| | || |||| | |||||||| || | || || ||||||| Sbjct 374042 GCGCCAGCAAGGAAGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGT 374101 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730 | | ||||| | || || | | | |||||||||||| ||| || ||| ||| Sbjct 374102 TCTTGACCGAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGT 374161 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACA 125787 |||| ||||| || || |||||||| || || | ||| || ||||| |||| Sbjct 374162 ACATTGAGTTCGTCGCCGATCGTCTGCTTGTCG---CTCTCGGCAACGAGAAGATCTACA 374218 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | | || ||||| || |||||| | ||| || || | || ||||||||||| | Sbjct 374219 AGTCTGCCAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCT 374278 Query 125848 TCGAGAAG 125855 |||||||| Sbjct 374279 TCGAGAAG 374286 >seq4 Length=2906552 Score = 150 bits (166), Expect = 3e-31 Identities = 323/477 (68%), Gaps = 12/477 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 973440 CAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGAC 973499 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | ||||| ||| ||| ||||||| || ||| | ||| Sbjct 973500 GTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCCCGTGAC 973559 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053 ||||| ||| |||||| | || ||| | ||||||||||| || || || ||| Sbjct 973560 TTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAAAAGAACTTGG-- 973617 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 |||||| || ||||||||| || | || || || | || |||| ||||| || | Sbjct 973618 ACTGGACGCTGATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAAT 973677 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCAC 97173 | ||||| ||| | || ||| | ||||| || || |||| | || | | Sbjct 973678 TCGAGGCTTTGTATGAGAAGTATGAGAAGGAGGGACG--TGGTCGCACGA--CCATCCGC 973733 Query 97174 G---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| |||||| | ||||| || || ||| |||||||| | || | ||| Sbjct 973734 GCCCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACTGAGACTGGTAACCCCTTCATG 973793 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| |||||||| || |||| |||||| || Sbjct 973794 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAGC 973853 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||||| || ||||| || ||| | |||||| |||| || ||| || |||||| Sbjct 973854 TCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTGCTGTTTGC 973910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058616415880