Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 seq3 87.8 2e-12 >seq7 Length=2414983 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | ||| | ||||||||||||||||| || | Sbjct 819871 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 819812 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 819811 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 819752 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||||| ||| | || || || || || ||||| || || || Sbjct 819751 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 819692 Query 48715 AAAAATCTGCATCGTGTCT 48733 |||||||||||| || || Sbjct 819691 GAAAATCTGCATCTTGCCT 819673 >seq3 Length=3158035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 48530 GTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT-TGTCGCTCGTCCTCCAGCTGCTTACC 48588 ||||||| ||| || |||||||| || ||| ||| | |||| |||||||||||||| Sbjct 1903391 GTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGAC-CGTCTTCCAGCTGCTTACC 1903449 Query 48589 GCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT 48648 || | ||||| |||||||| || || | | || |||||| ||| || ||| Sbjct 1903450 AGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTGGACTT 1903509 Query 48649 GA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGA 48706 || | | || ||||| |||| ||| ||| || | || || || || ||||||||| Sbjct 1903510 GACGTTGTCG--ATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGA 1903567 Query 48707 GTTTTCACAAAAATCTGCAT 48726 || || || |||||||| || Sbjct 1903568 GTCTTGACGAAAATCTGTAT 1903587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250876558063