Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8 176 6e-39 seq4 138 1e-27 >seq8 Length=2103943 Score = 176 bits (194), Expect = 6e-39 Identities = 376/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||||||||||||| | | || || ||||||||||| || || Sbjct 374015 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 373956 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || ||||| || || | || |||||| Sbjct 373955 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 373896 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33480 || || || || || |||||||||| || | || || || | |||| || Sbjct 373895 ATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 373836 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 373835 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 373776 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| ||| | | | | || || | || |||||||| | || || | Sbjct 373775 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTC 373716 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 373715 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 373656 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || || ||| || || ||| || || || || || || ||| ||| ||| Sbjct 373655 TGGACCTCGCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 373596 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 33776 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 373595 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 373537 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 373536 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTT 373477 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 373476 CTTGTACATTTGCCAGAT 373459 >seq4 Length=2906552 Score = 138 bits (152), Expect = 1e-27 Identities = 454/699 (65%), Gaps = 14/699 (2%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| ||||| | || ||||||| || ||| || || | | || || ||||| Sbjct 973651 CCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTCCAAGTTCTTTTCAACACGCTTCATG 973592 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| |||||||| ||||| | || | || | || | || || || || Sbjct 973591 AAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGCCG 973532 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||||| |||||| | | | || | ||||| || || | ||| ||| Sbjct 973531 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 973472 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 973471 GCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 973412 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| | ||| |||||||||||||| || |||| ||||| || | || || || Sbjct 973411 ACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 973352 Query 63468 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||||||| || | || | || || || || || ||||| || || || | | Sbjct 973351 GTGGCACGGATGCGGTGGACGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCATGG 973294 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | ||| || | ||||| ||||||||||| |||||||| || |||||| | | | Sbjct 973293 CACATGTCTTCAGAGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGA 973234 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | || |||| ||| | || || || || || | ||| || || || || | Sbjct 973233 AGCATGAGGACAGCTGGGCCTGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATGGG 973174 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTC----AATAGCTGAGTCT-ATATCCCA 63700 | || | || || | || ||||| ||||| | ||| | | | || |||| Sbjct 973173 TGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCC- 973115 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 |||| || || | || ||||| | ||||||||| || | ||||| |||||| Sbjct 973114 CAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCC 973059 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 | | |||| | ||| || ||||||||| || || || || || | ||| || Sbjct 973058 ATCAAGCTTCAGAAGGTATGACCGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAA 972999 Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 |||||| ||||| | |||| | |||| ||| | ||||| Sbjct 972998 GTCTCGATCGTAGACAATAGCGGAGTCGAGCTCCTCCTT 972960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946709429080