Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 163 3e-35 seq7 116 3e-21 seq3 107 2e-18 seq2 98.7 9e-16 >seq4 Length=2906552 Score = 163 bits (180), Expect = 3e-35 Identities = 919/1444 (64%), Gaps = 43/1444 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| || || ||||||||||| | ||||| ||| || | ||| || ||| |||| Sbjct 974494 TTGACAACTTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 974435 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | || | || || ||||| || | Sbjct 974434 TCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGG 974375 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || |||||| ||||||| |||||| | ||||| |||| |||| ||||| Sbjct 974374 AGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCAC 974315 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGGCT 145296 || || ||| | || |||||||||||| | || | |||||||| | || || | | Sbjct 974314 AGGTCAGAGGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGAT 974255 Query 145297 GCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGC 145356 ||||| || || ||| ||| ||||||| ||| | ||||| || || Sbjct 974254 CCCTTG-AATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGC 974196 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416 | || || ||||| || ||| |||| ||| | || || ||| | Sbjct 974195 CGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAA 974136 Query 145417 CGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCG 145476 ||||||||||| | ||||| ||||| || ||||| | || || || ||||| || Sbjct 974135 GGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCG 974076 Query 145477 ATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536 || ||||||||| | | ||| || || ||| || |||| || || || || Sbjct 974075 GTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGATTGACATCAATGATCTT 974016 Query 145537 ATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGC 145596 || | ||| || || || ||||| || | | | | ||| | ||||||| | | ||| Sbjct 974015 GTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGC-AGC 973957 Query 145597 C----TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 | | || | ||| || | ||| | || ||| | || ||||| || ||||| || Sbjct 973956 CTTCGTTGTAATCGA-CATA-AGC-AGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAA 973900 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || | | | ||| | | ||||||| ||| | ||| | |||||||| Sbjct 973899 CCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTC 973840 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 |||| || | ||| || || || | |||||| || ||||||||||||||| | || | Sbjct 973839 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTAC 973780 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCT 145832 ||||||| ||| | |||| ||| || || | ||| || || | || | | Sbjct 973779 CAGTCTCAGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGGGCGCGGA--TGGTCGT 973722 Query 145833 GGTA--GCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCA 145890 | | || ||||| | || || ||| || | |||| || | || ||||| Sbjct 973721 GCGACCACGTCCCTCCTTCTCATACTTCTCATACAAAGCCTCGAATTCCTCGCCATAGCA 973662 Query 145891 ATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGAC 145950 || | ||||| || || | |||||| |||||||||| ||| | ||| | || Sbjct 973661 GTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTCCAAGTTCTTTTCAAC 973602 Query 145951 GCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATC 146010 |||| ||| || | ||| || | ||| || || | |||||| || || || | Sbjct 973601 ACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGC---GCGGAC 973545 Query 146011 CTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCAC 146065 ||| | || || ||| || | || ||| | ||| | ||| ||| |||||||| Sbjct 973544 CTCTTCCTTGCCGTGGTTCTTGC-GGAGATCAAGGA-ACTCAAAGACGTCGGCGTGCCAG 973487 Query 146066 GGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGT 146122 || || | |||| ||| | ||| || || ||| |||||||| || || | | Sbjct 973486 GGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTG 973427 Query 146123 ACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT---A 146179 | ||||||| || || || | |||||| | ||| | | ||||| || | Sbjct 973426 GCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCA 973367 Query 146180 G-AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GC 146237 | | | || | |||| || || | || || || |||| ||| | ||| || || Sbjct 973366 GCAATGTA----AGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCAATACCACCAGC 973311 Query 146238 CGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 | | |||||| || ||| || ||| | || || |||||||| || |||||||||||| Sbjct 973310 CAT-CTTGGAAATCATGGCACATGTCTTC-AGAGTGTCGTAGATACCCTCAATGCTATCG 973253 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 |||| ||| ||| || ||||| ||| ||| ||| ||| ||| || || || || Sbjct 973252 TCCTTC--ATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCTGCGTTGA 973195 Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 ||| || ||| || || || || | || | | ||| | || || || | Sbjct 973194 ACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAGGA 973135 Query 146415 CGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474 | | |||||| || || ||||| | || || ||||| | |||||| || |||| Sbjct 973134 CACGCTCAATGTCATCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGTGGCC 973075 Query 146475 GCTC 146478 |||| Sbjct 973074 GCTC 973071 >seq7 Length=2414983 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 819906 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 819847 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| || |||||||||||||| || Sbjct 819846 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 819787 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 819786 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 819727 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 819726 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 819680 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| | Sbjct 116160 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 116101 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| ||| | || | |||||||||||| ||||| Sbjct 116100 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 116041 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||||| ||||| | Sbjct 116040 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCCACC 115981 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| || |||||| Sbjct 115980 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 115933 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || || || | || |||||| || |||||||| ||||| Sbjct 116546 GCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 116487 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || || |||| || ||||||||||| ||||| Sbjct 116486 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 116427 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 116426 AATACCCTCCTTGTC 116412 >seq3 Length=3158035 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 || ||| || |||||||| ||||||| |||| | ||| || |||||||| || ||| | Sbjct 1903396 CTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCGAA 1903455 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 |||||| ||||||||||| || || || || |||||||| || || ||||| | Sbjct 1903456 GATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTT 1903515 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || |||| || || | | | ||||| || || ||||| ||||| || || Sbjct 1903516 GTCGATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAGTCTTGAC 1903575 Query 131223 GAAAATCTGCAT 131234 ||||||||| || Sbjct 1903576 GAAAATCTGTAT 1903587 >seq2 Length=3541710 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| || ||| Sbjct 89114 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 89055 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 89054 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 88995 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 88994 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 88935 Query 131225 AA 131226 || Sbjct 88934 AA 88933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012428289920