Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8 158 2e-33 seq4 129 7e-25 >seq8 Length=2103943 Score = 158 bits (174), Expect = 2e-33 Identities = 372/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | | || | ||||||||||| || || Sbjct 374015 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 373956 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || ||||| || ||||| || ||||| ||||| | || ||||| Sbjct 373955 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 373896 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 32837 || || || || || |||||||||| || | || || || | |||| || Sbjct 373895 ATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 373836 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| ||||| ||||||||||| | ||||| || ||||| || || || Sbjct 373835 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 373776 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| ||| | | | | || || | || ||||| || | || || | Sbjct 373775 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTC 373716 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || || || || ||||||||||||| |||||||| ||| Sbjct 373715 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 373656 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || || ||| || || | | || || || || || || ||| ||| ||| Sbjct 373655 TGGACCTCGCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 373596 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 33133 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 373595 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 373537 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 373536 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTT 373477 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 373476 CTTGTACATTTGCCAGAT 373459 >seq4 Length=2906552 Score = 129 bits (142), Expect = 7e-25 Identities = 454/702 (65%), Gaps = 14/702 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| ||||| | || ||||||| || ||| || || | | || || ||| Sbjct 973654 AGGCCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTCCAAGTTCTTTTCAACACGCTTC 973595 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| |||||||| ||||| | || | || | || | || || || Sbjct 973594 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCTCTTCCTTG 973535 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| ||||| |||||| | | | || | ||||| || || | ||| Sbjct 973534 CCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAG 973475 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | ||||| || ||||| || |||||||| | ||||| || ||||| || Sbjct 973474 ATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTG 973415 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | |||| | ||| ||||||||||| || || ||||| ||||| || | || || Sbjct 973414 AACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAG 973355 Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| || | || | || || || || || ||||| || || || | Sbjct 973354 CCGGTGGCACGGATGCGGTGGACGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCA 973297 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || ||| || | || || ||||| ||||| || ||||| ||| |||||| | | Sbjct 973296 TGGCACATGTCTTCAGAGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACCA 973237 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 || || |||| ||| | || || || || || | ||| || || || | Sbjct 973236 AGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCAT 973177 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC----AATAGCTGAGTCT-ATATC 63552 | || || | || || | || ||||| ||||| | ||| | | | || || Sbjct 973176 GGGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTC 973117 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 || |||| || || | || ||||| | ||||||||| || | ||||| ||||| Sbjct 973116 CC-CAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTT 973062 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | | | |||| | ||| || ||||||||| || || || || || | ||| Sbjct 973061 GCCATCAAGCTTCAGAAGGTATGACCGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTT 973002 Query 63673 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 |||||||| ||||| | |||| | |||| ||| | ||||| Sbjct 973001 GAAGTCTCGATCGTAGACAATAGCGGAGTCGAGCTCCTCCTT 972960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631501014800