Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq10 134 3e-26
seq8 102 2e-16
seq4 98.7 2e-15
>seq10
Length=2028763
Score = 134 bits (148), Expect = 3e-26
Identities = 439/674 (65%), Gaps = 21/674 (3%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||||| || |||||||||||||||||||| ||||| | || ||||| | |
Sbjct 539406 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 539347
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|||| |||||||| ||| | || || || || |||||| |||| ||||||| | ||
Sbjct 539346 GGTGCTGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTCACCAACATTGCT 539287
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCC-----TCATTGTCTCTC 279870
||||| | | |||||| | |||| | | | || | | || || ||||
Sbjct 539286 TGGCTGGAGAACTACCTCA--AGTC---ACACCCCGACATCACCAGTTTGATCGTGTCTC 539232
Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930
|||||||||||||| | || ||| | | | ||| ||||| |||| || ||
Sbjct 539231 ACGACTCTGGCTTCTTGGACAACGTCACCACCGACATTTACCACTACGAGCCCAACAAGA 539172
Query 279931 AGCTCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCC 279989
||||| | | || ||| || ||||| | || ||||| ||||| |||||
Sbjct 539171 AGCTCGC-ATGCTACAAGGGTAACCTTGCGGCATTCGTCCAGCTTCGCCCCGAGGCCAAG 539113
Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049
|||||| ||| || ||| || | ||| | |||||| || || ||||
Sbjct 539112 AGCTACTACACTCTGTCGGCGTCCAACGTCCAGTTCAAGTTCCCTCCTCCTGGTATTCTC 539053
Query 280050 GAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109
|| |||| || || ||| || ||||| | | |||||| | | ||
Sbjct 539052 ACTGGTATCAAGTCCCAGACTCGTGCCATCATTCGCATGAGCAACGTCTCTTACACATAC 538993
Query 280110 CCCAATGGCCCCAA--CATC---TTCAGCAGTGTCAA-CTCGCAGGTTTCTATGAACTCA 280163
||||| | |||| |||| ||||| || || ||| | | || | |||
Sbjct 538992 CCCAAGGCTACCAAGCCATCGCTTTCAGACGTTTCTTGCTCTC---TCTCGCTCTCCTCG 538936
Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223
|| | | | | || |||||||| ||||| || ||||||||| | ||||| | || ||
Sbjct 538935 CGTGTGGCTATTATCGGACCCAACGGTGCTGGCAAGTCTACCTTGATCAAGCTGCTCACC 538876
Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283
|| |||||| |||||| || ||| |||||| |||||| |||| || | |||
Sbjct 538875 GGTGAGACCATTCCCACTGTTGGCAAGGTTGAGAAGCACCCCAACCTGCGTATCGGCTAC 538816
Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343
| ||||||||||| | ||| |||||| ||| |||| | |||||| ||||| ||
Sbjct 538815 ATTAAGCAGCACGCTTTGGAGCACGTCGAGATGCACTTGGAGAAGACTCCCAACCAGTAT 538756
Query 280344 ATTCAGTGGCGCTA 280357
|||||||||| ||
Sbjct 538755 CTTCAGTGGCGTTA 538742
>seq8
Length=2103943
Score = 102 bits (112), Expect = 2e-16
Identities = 349/541 (65%), Gaps = 15/541 (3%)
Strand=Plus/Minus
Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903
||||||||||||||| ||| ||||| ||||||||| | ||| |||||||| | ||
Sbjct 374001 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 373942
Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963
|| ||| ||||||||||||| | | ||||| || ||| | | |||||| ||
Sbjct 373941 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 373882
Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTG 252017
| | ||||| ||||||| ||||| || ||||||||| | ||||
Sbjct 373881 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGAT 373825
Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTT 252077
||||| | |||||||| | || || || || || || || | ||||| || |
Sbjct 373824 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCT 373765
Query 252078 CCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137
|||| | | |||| |||| | ||| | || || ||||| |||| || |||||
Sbjct 373764 GCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTCTCGGAGTGGAT 373705
Query 252138 GGATTCGTTGAACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTC 252194
| || | | |||||| | | |||| || || | ||| || || | ||| ||
Sbjct 373704 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTC 373648
Query 252195 CGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCC 252254
|||| | | | |||||| | || |||||||| | | ||||||||| |
Sbjct 373647 GCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGC 373588
Query 252255 AAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAAT 252314
|| ||| |||||||| ||| || ||||| || || ||||||| |
Sbjct 373587 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 373528
Query 252315 GTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374
|||| |||| || ||||| | |||||||| | || | | ||||||||||||||
Sbjct 373527 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 373468
Query 252375 T 252375
|
Sbjct 373467 T 373467
>seq4
Length=2906552
Score = 98.7 bits (108), Expect = 2e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || |||||||| ||||| |||||| ||||| |||| | | ||
Sbjct 2120381 CTCACTCCCGTATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 2120440
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 2120441 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 2120499
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| ||||| ||||||
Sbjct 2120500 GACTCTCTGGGTGCTCTG 2120517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835970342983
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |