Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10 134 3e-26 seq8 102 2e-16 seq4 98.7 2e-15 >seq10 Length=2028763 Score = 134 bits (148), Expect = 3e-26 Identities = 439/674 (65%), Gaps = 21/674 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| | | Sbjct 539406 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 539347 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||| |||||||| ||| | || || || || |||||| |||| ||||||| | || Sbjct 539346 GGTGCTGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTCACCAACATTGCT 539287 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCC-----TCATTGTCTCTC 279870 ||||| | | |||||| | |||| | | | || | | || || |||| Sbjct 539286 TGGCTGGAGAACTACCTCA--AGTC---ACACCCCGACATCACCAGTTTGATCGTGTCTC 539232 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||||||| | || ||| | | | ||| ||||| |||| || || Sbjct 539231 ACGACTCTGGCTTCTTGGACAACGTCACCACCGACATTTACCACTACGAGCCCAACAAGA 539172 Query 279931 AGCTCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCC 279989 ||||| | | || ||| || ||||| | || ||||| ||||| ||||| Sbjct 539171 AGCTCGC-ATGCTACAAGGGTAACCTTGCGGCATTCGTCCAGCTTCGCCCCGAGGCCAAG 539113 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| ||| || ||| || | ||| | |||||| || || |||| Sbjct 539112 AGCTACTACACTCTGTCGGCGTCCAACGTCCAGTTCAAGTTCCCTCCTCCTGGTATTCTC 539053 Query 280050 GAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || |||| || || ||| || ||||| | | |||||| | | || Sbjct 539052 ACTGGTATCAAGTCCCAGACTCGTGCCATCATTCGCATGAGCAACGTCTCTTACACATAC 538993 Query 280110 CCCAATGGCCCCAA--CATC---TTCAGCAGTGTCAA-CTCGCAGGTTTCTATGAACTCA 280163 ||||| | |||| |||| ||||| || || ||| | | || | ||| Sbjct 538992 CCCAAGGCTACCAAGCCATCGCTTTCAGACGTTTCTTGCTCTC---TCTCGCTCTCCTCG 538936 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || | | | | || |||||||| ||||| || ||||||||| | ||||| | || || Sbjct 538935 CGTGTGGCTATTATCGGACCCAACGGTGCTGGCAAGTCTACCTTGATCAAGCTGCTCACC 538876 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 || |||||| |||||| || ||| |||||| |||||| |||| || | ||| Sbjct 538875 GGTGAGACCATTCCCACTGTTGGCAAGGTTGAGAAGCACCCCAACCTGCGTATCGGCTAC 538816 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 | ||||||||||| | ||| |||||| ||| |||| | |||||| ||||| || Sbjct 538815 ATTAAGCAGCACGCTTTGGAGCACGTCGAGATGCACTTGGAGAAGACTCCCAACCAGTAT 538756 Query 280344 ATTCAGTGGCGCTA 280357 |||||||||| || Sbjct 538755 CTTCAGTGGCGTTA 538742 >seq8 Length=2103943 Score = 102 bits (112), Expect = 2e-16 Identities = 349/541 (65%), Gaps = 15/541 (3%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||||||||||||| ||| ||||| ||||||||| | ||| |||||||| | || Sbjct 374001 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 373942 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| | | ||||| || ||| | | |||||| || Sbjct 373941 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 373882 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTG 252017 | | ||||| ||||||| ||||| || ||||||||| | |||| Sbjct 373881 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGAT 373825 Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTT 252077 ||||| | |||||||| | || || || || || || || | ||||| || | Sbjct 373824 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCT 373765 Query 252078 CCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 |||| | | |||| |||| | ||| | || || ||||| |||| || ||||| Sbjct 373764 GCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTCTCGGAGTGGAT 373705 Query 252138 GGATTCGTTGAACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTC 252194 | || | | |||||| | | |||| || || | ||| || || | ||| || Sbjct 373704 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTC 373648 Query 252195 CGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCC 252254 |||| | | | |||||| | || |||||||| | | ||||||||| | Sbjct 373647 GCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGC 373588 Query 252255 AAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAAT 252314 || ||| |||||||| ||| || ||||| || || ||||||| | Sbjct 373587 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 373528 Query 252315 GTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 |||| |||| || ||||| | |||||||| | || | | |||||||||||||| Sbjct 373527 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 373468 Query 252375 T 252375 | Sbjct 373467 T 373467 >seq4 Length=2906552 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || |||||||| ||||| |||||| ||||| |||| | | || Sbjct 2120381 CTCACTCCCGTATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 2120440 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 2120441 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 2120499 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 2120500 GACTCTCTGGGTGCTCTG 2120517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835970342983