Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8 208 1e-48 seq7 179 7e-40 seq3 114 2e-20 seq4 109 1e-18 seq10 86.0 1e-11 >seq8 Length=2103943 Score = 208 bits (230), Expect = 1e-48 Identities = 570/864 (66%), Gaps = 17/864 (2%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || |||||||||||||| |||||| Sbjct 374321 TTCATGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCA 374262 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 |||| |||||| |||||||||||| |||||||| | | | ||| || Sbjct 374261 CCGAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTG 374202 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || | | || || || |||||||| |||||||| ||||||||| ||| Sbjct 374201 CCGAGAGCGACAAGCAGACGATCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAG 374142 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||| | | ||| |||| || ||| | ||| || | || | ||| Sbjct 374141 TTCATGCCAAGGAGGGCGCAAGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACA 374082 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTCGAAT 10230 || || || |||| | ||| || | | | || ||||| ||| | || | Sbjct 374081 GCATCGGTGATGATGTCACGGATCACTTCCTTGCTGGC-GCG-GTTCTTGAGGTGAGAGT 374024 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 ||| || |||| | ||| || |||||||| || ||||| ||||||||| | Sbjct 374023 GCAGCAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 373964 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | |||||| |||||||| || || || |||||||| |||| | || | ||| Sbjct 373963 AGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 373904 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTCG 10409 ||| | | |||||| ||| | |||| || ||||||| || ||||| | | || Sbjct 373903 TGAAGAAGATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCT 373844 Query 10410 CG--CGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 | | | | || |||||| | |||||||| | | | ||| || ||||| | Sbjct 373843 TGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAA 373784 Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527 | || | |||||| | | | |||| | | | |||| || | ||| | |||||||| Sbjct 373783 TGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTATCGATGAGCAGGG 373724 Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586 |||| |||| ||||| | |||| | |||| | ||||||| ||| || ||| Sbjct 373723 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGAGCC 373665 Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCG 10646 |||| | ||| || | |||| | | ||||||||| | || |||||||| Sbjct 373664 TCGGGGATCTGGACCTCGCCACTAAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCA 373605 Query 10647 CTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG---- 10702 | | ||||||||| | |||||||| |||||||| ||| ||||||||||| Sbjct 373604 GAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGG 373545 Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762 || ||| ||||| || ||||| | || | | ||| || |||||||||||| Sbjct 373544 TTGTTC----CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGA 373489 Query 10763 GGCAACGGCCTTCTTGTACATCTG 10786 ||| |||||||||||||||| || Sbjct 373488 GGCCTCGGCCTTCTTGTACATTTG 373465 >seq7 Length=2414983 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || |||||| Sbjct 819906 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 819847 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 819846 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 819787 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 819786 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 819727 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 819726 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 819680 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 116160 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 116101 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || || | || ||||| || ||| Sbjct 116100 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 116041 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || |||||||| || | || || || Sbjct 116040 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCCACC 115981 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 115980 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 115934 >seq3 Length=3158035 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || ||||| || | | || ||||| || |||||||| || Sbjct 1903430 CCGTCTTCCAGCTGCTTACCAGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCT 1903489 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||| | ||||||| ||||||||||| | ||||| || | | ||| Sbjct 1903490 TTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTAAGGGTA 1903549 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||| ||||||||||| ||||| || Sbjct 1903550 ATTGTCTTGCCGGTGAGAGTCTTGACGAAAATCTGTAT 1903587 >seq4 Length=2906552 Score = 109 bits (120), Expect = 1e-18 Identities = 394/605 (65%), Gaps = 46/605 (8%) Strand=Plus/Minus Query 225415 CTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAA 225473 |||||| ||||| || ||| | ||| || ||||||||||||||||||||| || || | Sbjct 2119554 CTCGTAGTGAACGATGTGCTG-GCAGACGTTGTCAAGGAAGCCAGAGTCGTGAGAGACGA 2119496 Query 225474 TGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTGCGTGAT-GAGCCATGCCACGTTGCT 225531 ||||||| | || | | || |||||| || | |||||| ||||| | Sbjct 2119495 TGATGGAAGTGCAGGGGGAGCTGG----TGAGGTA-GTCCTCGAGCCACTTGACGTTCTT 2119441 Query 225532 GACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGC 225591 ||||||| |||||| ||||| ||||| || | ||| || |||| | || || || Sbjct 2119440 CACGTCCAAGTGGTTAGTAGGCTCGTCGAGCAACAGAATATCAGGGGCCTCGAAGACAGC 2119381 Query 225592 GCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAAACAGAGTG 225651 || |||| |||||||| ||||| || || ||||||| | |||| | Sbjct 2119380 ACGGCACAGAGCGAGCTTCATCTTCCAACCACCAGACAGGGCG------GAAATCTCGCC 2119327 Query 225652 CTTAGCT------TCGTCAAAGCCGTACTC---CAGGAGCGTCTGGATAATGCGCTCGGG 225702 |||| | ||| |||||| |||| |||| || ||| || | | || ||| Sbjct 2119326 CTTAACCATCTGCTCGGTGAAGCCGAACTCGTCCAGGCGCTTCTCGACA-TCAGCCTGGG 2119268 Query 225703 AGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA--------GGT--AATCATATACGG 225752 || || | || |||| |||| | || ||| | || || Sbjct 2119267 TGA--------CGTCGACCTTGGCCTCGG-CAAGCTTCTTCATGGTCCAGTCGATGGTGG 2119217 Query 225753 TCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAA 225811 |||| || | ||| | ||||| |||||| || ||| | || ||| || | | Sbjct 2119216 TCATCTCGGTATCAGCAGAGTCAAGGTCGTGCTCAACGAAGACAGTCTTGACTTCGCTCT 2119157 Query 225812 GCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCC 225871 || | |||||| ||||| | ||| | || || ||||| | || ||| |||||| Sbjct 2119156 GCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTGCCG 2119098 Query 225872 GCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAG 225931 | |||||||||||| || |||||| | | || ||||||| | |||| | || | Sbjct 2119097 GAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGGCGGAGGTGGGTCTGG 2119038 Query 225932 TTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCC 225991 || || ||||||||| |||| |||||||| ||||| ||| | ||| |||||||| ||| Sbjct 2119037 TTGAGCAGGATCTTGGCACCGTAGGCAAGAGAGAATGTGCAGTTGCAAAGGTCCTCGCCC 2118978 Query 225992 TCCTC 225996 ||||| Sbjct 2118977 TCCTC 2118973 Score = 89.7 bits (98), Expect = 9e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31406 AGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGC 31465 ||| ||||| | || ||| ||| || |||||||||| | | ||| || | || Sbjct 974210 AGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGC 974151 Query 31466 CGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACC 31525 | || ||| ||||| ||||||||||| | ||| |||| ||||||||||||||| Sbjct 974150 CTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACC 974091 Query 31526 CACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACAT 31585 || ||||| || || |||||||||| || | ||||| | | | |||| | Sbjct 974090 AACACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGATT 974031 Query 31586 GACGTCAATGCTCTTGTCGAGGTT 31609 ||| |||||| |||||| |||||| Sbjct 974030 GACATCAATGATCTTGTTGAGGTT 974007 >seq10 Length=2028763 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||||| ||| | |||| ||| |||| | || | ||| Sbjct 538742 TAACGCCACTGAAGATACTGGTTGGGAGTCTTCTCCAAGTGCATCTCGACGTGCTCCAAA 538801 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || ||| ||| Sbjct 538802 GCGTGCTGCTTAATGTAGCCGATACGCAGGTTGGGGTGCTTCTCAACCTTGCCAACAGTG 538861 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | ||| |||||||| | |||||| | |||| |||||| ||||| ||||| || Sbjct 538862 GGAATGGTCTCACCGGTGAGCAGCTTGATCAAGGTAGACTTGCCAGCACCGTTGGGTCCG 538921 Query 225158 AT 225159 || Sbjct 538922 AT 538923 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574 ||||| || | |||| |||| |||| |||||| ||||||||||||| || |||| ||| Sbjct 539282 AGCCAAGCAATGTTGGTGACATCCAAGTGGTTAGTAGGTTCGTCCAACAGGAGGACATCA 539341 Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAG 225634 ||| | | | ||||| || | || | |||||||| ||||| || || || || ||| Sbjct 539342 GCACCCTTCAACATGGCTCGGGCCAGGGCGAGCTTCATCTTCCAACCACCAGAGAGAGAG 539401 Query 225635 CCGA 225638 |||| Sbjct 539402 CCGA 539405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621674222360